Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1518 ATGCCGAATATGGGCTTATCTGGAACTCTGTCCCCTAGCATTGGAAACCTCAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTACAATCCCAGATGATATAGGAGGACTTTCAGAGCTTCAGACTCTTGACCTTTCTAGCAATCAGTTTGTTGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTAAATTACTTGAAGCTTAGTGGTAACAAGTTAAGTGGACCAATACCGGAATCGGTTGCAAATATCTCAGGCCTTACCTTTTTGGATTTATCAAATAATAATCTAAGTGGTTCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGATTCCTTTGCGCATCTTCATCATCTACAGTTTGTGGAATAGTTTCAAAACCAGTTAACGAAACTGGTCCGCCTCAGAAAGATAATGGCCATCATCACTTGGTTCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTTTGTTGTGTTACTTGTTGGCTGGGTACATTGTTATAGATCTCAACTCGTCTTCACATCCTACGTGCAGCAAGATTATGAGTTTGATATTGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACGTGTAACTTTAGTCCCCAAAACATCCTTGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGGTATCTTCCAAATGGAACATATGTTGCTGTCAAGAGACTGAAGGATCCAAATTGTACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCGGTACACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACACCAGATGAGAGGTTGCTTGTTTATCCATACATGCCAAATGGGAGTGTCGCCGACCGCTTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGGAGATTGCATATAGCCCTCGGTGCAGCACGCGGACTTCTATACTTGCACGAGCAGTGTAACCCGAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCTGTGGTTGGAGATTTCGGTCTGGCAAAGATGTTAGATAGGAGGGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCACCAGAATATCTTTCGACTGGACAATCTTCAGAAAAGACTGATGTCTTTGGATTTGGCATATTGGTTCTGGAACTCCTAACAGGGCAAAAAGCACTAGATGCTGGCAATGGTCATGTCCGAAAGGGAATGATTCTCGAATGGGTTAGAACAATACACGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAGGCTGTAGAATTGGCTCTGCAATGTACTCGGTCACATCCTCAACTTAGACCAAAGATGTCTGAGATTTTGAAGGTTTTAGAAGGTCTTGTTGGGCAGTCGAGCCAAACGGAGGACTCTCCGAGTGGAGCAAGTCTATATGAGGATAGAGCTCACAGTTTCTCCAGAAACTACAGTGATATTCATGAAGAATCTTCATTTGTTGTCGAAGACATGGAGCTTTCGGGACCTCGGTGA 1617 42.61 MPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGTIPDDIGGLSELQTLDLSSNQFVGGIPSSLGFLTHLNYLKLSGNKLSGPIPESVANISGLTFLDLSNNNLSGSTPRILAKEYSVAGNRFLCASSSSTVCGIVSKPVNETGPPQKDNGHHHLVLSIALIVSFTFVVFVVLLVGWVHCYRSQLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNCTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGHVRKGMILEWVRTIHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTRSHPQLRPKMSEILKVLEGLVGQSSQTEDSPSGASLYEDRAHSFSRNYSDIHEESSFVVEDMELSGPR 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23471039 23475803 + Sed0020622.2 Sed14g1518 737236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1518 538 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 538 - -
Sed14g1518 538 SUPERFAMILY L domain-like 2 115 - -
Sed14g1518 538 Pfam Leucine Rich Repeat 67 88 IPR001611 GO:0005515(InterPro)
Sed14g1518 538 Pfam Leucine Rich Repeat 92 111 IPR001611 GO:0005515(InterPro)
Sed14g1518 538 Pfam Leucine Rich Repeat 19 41 IPR001611 GO:0005515(InterPro)
Sed14g1518 538 Pfam Leucine Rich Repeat 44 65 IPR001611 GO:0005515(InterPro)
Sed14g1518 538 ProSitePatterns Protein kinases ATP-binding region signature. 221 243 IPR017441 GO:0005524(InterPro)
Sed14g1518 538 SUPERFAMILY Protein kinase-like (PK-like) 197 488 IPR011009 -
Sed14g1518 538 FunFam Somatic embryogenesis receptor-like kinase 1 291 502 - -
Sed14g1518 538 SMART serkin_6 215 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1518 538 ProSiteProfiles Protein kinase domain profile. 215 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1518 538 Gene3D Transferase(Phosphotransferase) domain 1 291 499 - -
Sed14g1518 538 Gene3D Phosphorylase Kinase; domain 1 185 290 - -
Sed14g1518 538 Pfam Protein kinase domain 218 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1518 538 Gene3D Ribonuclease Inhibitor 1 132 IPR032675 -
Sed14g1518 538 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 11 131 - -
Sed14g1518 538 FunFam Somatic embryogenesis receptor kinase 1 184 290 - -
Sed14g1518 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1518 Sed-Chr14:23471039 Sed14g1520 Sed-Chr14:23471039 3.80E-260 dispersed
Sed14g1517 Sed-Chr14:23471039 Sed14g1518 Sed-Chr14:23471039 2.20E-259 tandem
Sed14g1518 Sed-Chr14:23471039 Sed14g1519 Sed-Chr14:23471039 1.90E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80212 PF00069 Pkinase 1.80E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1518 - - - 0.0