Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1519 ATGTCGATGAAGAGTAGGATGGGGGATGAACGGGGAGTGATGGAAGGATGGGATATTAATTCTGTTGATCCATGTACTTGGAATATGGTTGCTTGCTCTACTGAGAGCTTTGTGATTTCTCTTGAGATGCCGAATATGGGCTTATCTGGAACTCTGTCCCCTAGCATTGGAAACCTCAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTACAATCCCAGATGATATAGGAGGACTTTCAGAGCTTCAGACTCTTGACCTTTCTAGCAATCAGTTTGTTGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTAAATTACTTGAAGCTTAGTGGTAACAAGTTAAGTGGACCAATACCGGAATCGGTTGCAAATATCTCAGGCCTTACCTTTTTGGATTTATCAAATAATAATCTAAGTGGTTCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGATTCCTTTGCGCATCTTCATCATCTACAGTTTGTGGAATAGTTTCAAAACCAGTTAACGAAACTGGTCCGCCTCAGAAAGATAATGGCCATCATCACTTGGTTCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTTTGTTGTGTTACTTGTTGGCTGGGTACATTGTTATAGATCTCAACTCGTCTTCACATCCTACGTGCAGCAAGATTATGAGTTTGATATTGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACGTGTAACTTTAGTCCCCAAAACATCCTTGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGGTATCTTCCAAATGGAACATATGTTGCTGTCAAGAGACTGAAGGATCCAAATTGTACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCGGTACACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACACCAGATGAGAGGTTGCTTGTTTATCCATACATGCCAAATGGGAGTGTCGCCGACCGCTTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGGAGATTGCATATAGCCCTCGGTGCAGCACGCGGACTTCTATACTTGCACGAGCAGTGTAACCCGAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCTGTGGTTGGAGATTTCGGTCTGGCAAAGATGTTAGATAGGAGGGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCACCAGAATATCTTTCGACTGGACAATCTTCAGAAAAGACTGATGTCTTTGGATTTGGCATATTGGTTCTGGAACTCCTAACAGGGCAAAAAGCACTAGATGCTGGCAATGGTCATGTCCGAAAGGGAATGATTCTCGAATGGGTTAGAACAATACACGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAGGCTGTAGAATTGGCTCTGCAATGTACTCGGTCACATCCTCAACTTAGACCAAAGATGTCTGAGATTTTGAAGGTTTTAGAAGGTCTTGTTGGGCAGTCGAGCCAAACGGAGGACTCTCCGAGTGGAGCAAGTCTATATGAGGATAGAGCTCACAGTTTCTCCAGAAACTACAGTGATATTCATGAAGAATCTTCATTTGTTGTCGAAGACATGGAGCTTTCGGGACCTCGGTGA 1743 42.69 MSMKSRMGDERGVMEGWDINSVDPCTWNMVACSTESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGTIPDDIGGLSELQTLDLSSNQFVGGIPSSLGFLTHLNYLKLSGNKLSGPIPESVANISGLTFLDLSNNNLSGSTPRILAKEYSVAGNRFLCASSSSTVCGIVSKPVNETGPPQKDNGHHHLVLSIALIVSFTFVVFVVLLVGWVHCYRSQLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNCTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGHVRKGMILEWVRTIHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTRSHPQLRPKMSEILKVLEGLVGQSSQTEDSPSGASLYEDRAHSFSRNYSDIHEESSFVVEDMELSGPR 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23471039 23475803 + Sed0020622.3 Sed14g1519 737237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1519 580 FunFam Somatic embryogenesis receptor kinase 1 226 332 - -
Sed14g1519 580 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 153 - -
Sed14g1519 580 Pfam Leucine rich repeat N-terminal domain 1 33 IPR013210 -
Sed14g1519 580 SUPERFAMILY Protein kinase-like (PK-like) 239 530 IPR011009 -
Sed14g1519 580 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 580 - -
Sed14g1519 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g1519 580 Pfam Leucine Rich Repeat 86 107 IPR001611 GO:0005515(InterPro)
Sed14g1519 580 Pfam Leucine Rich Repeat 134 153 IPR001611 GO:0005515(InterPro)
Sed14g1519 580 Pfam Leucine Rich Repeat 61 83 IPR001611 GO:0005515(InterPro)
Sed14g1519 580 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515(InterPro)
Sed14g1519 580 ProSiteProfiles Protein kinase domain profile. 257 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1519 580 Gene3D Ribonuclease Inhibitor 1 174 IPR032675 -
Sed14g1519 580 Gene3D Transferase(Phosphotransferase) domain 1 333 541 - -
Sed14g1519 580 SUPERFAMILY L domain-like 3 157 - -
Sed14g1519 580 FunFam Somatic embryogenesis receptor-like kinase 1 333 544 - -
Sed14g1519 580 Gene3D Phosphorylase Kinase; domain 1 227 332 - -
Sed14g1519 580 Pfam Protein kinase domain 260 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1519 580 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524(InterPro)
Sed14g1519 580 SMART serkin_6 257 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1517 Sed-Chr14:23471039 Sed14g1519 Sed-Chr14:23471039 8.00E-286 dispersed
Sed14g1519 Sed-Chr14:23471039 Sed14g1521 Sed-Chr14:23471039 1.40E-260 dispersed
Sed14g1518 Sed-Chr14:23471039 Sed14g1519 Sed-Chr14:23471039 1.90E-259 tandem
Sed14g1519 Sed-Chr14:23471039 Sed14g1520 Sed-Chr14:23471039 1.40E-260 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80213 PF00069 Pkinase 2.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1519 - - - 0.0