Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1521 ATGCTTCTAATTCTTGTTCTTATTGCTAGTGAGATGCCGAATATGGGCTTATCTGGAACTCTGTCCCCTAGCATTGGAAACCTCAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTACAATCCCAGATGATATAGGAGGACTTTCAGAGCTTCAGACTCTTGACCTTTCTAGCAATCAGTTTGTTGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTAAATTACTTGAAGCTTAGTGGTAACAAGTTAAGTGGACCAATACCGGAATCGGTTGCAAATATCTCAGGCCTTACCTTTTTGGATTTATCAAATAATAATCTAAGTGGTTCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGATTCCTTTGCGCATCTTCATCATCTACAGTTTGTGGAATAGTTTCAAAACCAGTTAACGAAACTGGTCCGCCTCAGAAAGATAATGGCCATCATCACTTGGTTCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTTTGTTGTGTTACTTGTTGGCTGGGTACATTGTTATAGATCTCAACTCGTCTTCACATCCTACGTGCAGCAAGATTATGAGTTTGATATTGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACGTGTAACTTTAGTCCCCAAAACATCCTTGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGGTATCTTCCAAATGGAACATATGTTGCTGTCAAGAGACTGAAGGATCCAAATTGTACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCGGTACACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACACCAGATGAGAGGTTGCTTGTTTATCCATACATGCCAAATGGGAGTGTCGCCGACCGCTTGAGAGATGCAGGCCAAGAGAAGCCATCATTGAATTGGAACAGGAGATTGCATATAGCCCTCGGTGCAGCACGCGGACTTCTATACTTGCACGAGCAGTGTAACCCGAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCTGTGGTTGGAGATTTCGGTCTGGCAAAGATGTTAGATAGGAGGGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCACCAGAATATCTTTCGACTGGACAATCTTCAGAAAAGACTGATGTCTTTGGATTTGGCATATTGGTTCTGGAACTCCTAACAGGGCAAAAAGCACTAGATGCTGGCAATGGTCATGTCCGAAAGGGAATGATTCTCGAATGGGTTAGAACAATACACGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTAAAAGGATGTTTTGATGCAATGGAGCTGGAAAAGGCTGTAGAATTGGCTCTGCAATGTACTCGGTCACATCCTCAACTTAGACCAAAGATGTCTGAGATTTTGAAGGTTTTAGAAGGTCTTGTTGGGCAGTCGAGCCAAACGGAGGACTCTCCGAGTGGAGCAAGTCTATATGAGGATAGAGCTCACAGTTTCTCCAGAAACTACAGTGATATTCATGAAGAATCTTCATTTGTTGTCGAAGACATGGAGCTTTCGGGACCTCGGTGA 1650 42.42 MLLILVLIASEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGTIPDDIGGLSELQTLDLSSNQFVGGIPSSLGFLTHLNYLKLSGNKLSGPIPESVANISGLTFLDLSNNNLSGSTPRILAKEYSVAGNRFLCASSSSTVCGIVSKPVNETGPPQKDNGHHHLVLSIALIVSFTFVVFVVLLVGWVHCYRSQLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNCTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGHVRKGMILEWVRTIHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTRSHPQLRPKMSEILKVLEGLVGQSSQTEDSPSGASLYEDRAHSFSRNYSDIHEESSFVVEDMELSGPR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23471039 23475803 + Sed0020622.5 Sed14g1521 737239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1521 549 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 22 142 - -
Sed14g1521 549 Gene3D Ribonuclease Inhibitor 6 143 IPR032675 -
Sed14g1521 549 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 549 - -
Sed14g1521 549 Pfam Protein kinase domain 229 496 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1521 549 Pfam Leucine Rich Repeat 30 52 IPR001611 GO:0005515(InterPro)
Sed14g1521 549 Pfam Leucine Rich Repeat 103 122 IPR001611 GO:0005515(InterPro)
Sed14g1521 549 Pfam Leucine Rich Repeat 78 99 IPR001611 GO:0005515(InterPro)
Sed14g1521 549 Pfam Leucine Rich Repeat 55 76 IPR001611 GO:0005515(InterPro)
Sed14g1521 549 SMART serkin_6 226 498 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1521 549 ProSitePatterns Protein kinases ATP-binding region signature. 232 254 IPR017441 GO:0005524(InterPro)
Sed14g1521 549 SUPERFAMILY Protein kinase-like (PK-like) 208 499 IPR011009 -
Sed14g1521 549 FunFam Somatic embryogenesis receptor-like kinase 1 302 513 - -
Sed14g1521 549 Gene3D Transferase(Phosphotransferase) domain 1 302 510 - -
Sed14g1521 549 Gene3D Phosphorylase Kinase; domain 1 196 301 - -
Sed14g1521 549 ProSiteProfiles Protein kinase domain profile. 226 502 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1521 549 FunFam Somatic embryogenesis receptor kinase 1 195 301 - -
Sed14g1521 549 SUPERFAMILY L domain-like 12 126 - -
Sed14g1521 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1519 Sed-Chr14:23471039 Sed14g1521 Sed-Chr14:23471039 1.40E-260 dispersed
Sed14g1521 Sed-Chr14:23471039 Sed10g1393 Sed-Chr10:29843960 1.70E-74 dispersed
Sed14g1520 Sed-Chr14:23471039 Sed14g1521 Sed-Chr14:23471039 2.60E-264 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80215 PF00069 Pkinase 1.90E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1521 - - - 0.0