Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1534 ATGGTTTCCAAAACCATCGAAAAATCCCTCCGCCGCAAGTCCGCCGTCTTCGCCGCCGTCCACCGCCGTCTTGTGAAAATCTTCTCCAAGTTATCCTCCATGACCACCGCCAACCGCCGCAAAGGCTACAAGCCCTTGAAGAAAATCTCAACCGCCTCCCCCGAACCGGACATTGTCAGAACGCTAGCCTCCCACAACCGCCTCCTTCCACCTCCGACCTCCCCGCCGAAGCCGACGATTCTTCTCGACCTAGACGAGACTCTCGTCCATTCCAAACTCGATCCTCCGCCGCCCGGCCGATTCGATTTCGTAATCAGCCCGAGGATCAACGGCCAAATCCTCAACTTCTACGTACTCAAACGCCCCGGCGTCGATCAATTTCTCGAATCCTTAGCCGATCGGTTCGAGGTCGTTGTCTTCACCGCCGGACGGAAGGAATACGCCTCGCTCGTACTCGATCATCTCGACAAGAAATCGGTGATTTCGCACCTGCTGTGTCGAGATTCTTGCAAGGAGGTTGCAGGGAAATACGTGAAGGATCTGTCTGAAATTGGGAGGGATTTGAGGAGAGTGGTCATTGTGGATGATAATCCCAATGCTTATTCGTTTCAGCCCGAAAATGCGATTCCGATTCGATCGTTTGTCGACGATGCGGCGGATACCGAGCTTTGGAAACTGATGAAGTTTTTTGAGGTTTGTGATTATTATGATGATATGAGGGATGCTGTGAAGTGTTTGAAAATGGCGAATCTGAGGAGTTGA 762 52.1 MVSKTIEKSLRRKSAVFAAVHRRLVKIFSKLSSMTTANRRKGYKPLKKISTASPEPDIVRTLASHNRLLPPPTSPPKPTILLDLDETLVHSKLDPPPPGRFDFVISPRINGQILNFYVLKRPGVDQFLESLADRFEVVVFTAGRKEYASLVLDHLDKKSVISHLLCRDSCKEVAGKYVKDLSEIGRDLRRVVIVDDNPNAYSFQPENAIPIRSFVDDAADTELWKLMKFFEVCDYYDDMRDAVKCLKMANLRS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23571163 23572063 - Sed0015299.1 Sed14g1534 737252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1534 253 CDD HAD_FCP1-like 80 211 - -
Sed14g1534 253 Gene3D - 58 245 IPR023214 -
Sed14g1534 253 SUPERFAMILY HAD-like 69 242 IPR036412 -
Sed14g1534 253 PANTHER DULLARD PROTEIN PHOSPHATASE 40 244 IPR050365 GO:0004721(PANTHER)
Sed14g1534 253 FunFam NLI interacting factor-like phosphatase family protein 65 248 - -
Sed14g1534 253 NCBIfam dullard-like phosphatase domain 78 242 IPR011948 GO:0016791(InterPro)
Sed14g1534 253 ProSiteProfiles FCP1 homology domain profile. 73 233 IPR004274 -
Sed14g1534 253 SMART forpap2 76 221 IPR004274 -
Sed14g1534 253 Pfam NLI interacting factor-like phosphatase 79 240 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1534 K15731 - - csv:101206664 338.961
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2742 Sed-Chr7:42525466 Sed14g1534 Sed-Chr14:23571163 6.80E-19 dispersed
Sed10g0165 Sed-Chr10:1027545 Sed14g1534 Sed-Chr14:23571163 8.80E-30 dispersed
Sed10g0206 Sed-Chr10:1192396 Sed14g1534 Sed-Chr14:23571163 1.10E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g47 . . . . . . . . Cmo05g00116 Cmo12g00562 . Cma05g00110 . Car12g00572 Sed14g1534 Cpe07g00545 . Bhi04g00482 Tan02g2217 Cmetu04g2861 . Hepe08g1373 . Lcy13g2168 . . . . . . . . . Cone17ag0911 Cone20ag0254 . . . . . . . . . . . . . . . . Cma12g00625 . Car05g00095 Cpe11g00090 . . . . . . . . . . . . . . . Lsi08g01564 Csa02g01857 Chy03g01628 .