Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1536 ATGGCTGAAATTTCAGGAACAACAAATGGACATGTTTCTTTGAACATCAAACATGAATCCACACCCAATATCACAACAACCATGCAACCAACCAAAGACTGTAGCTCTGTTTTTTTCATTCAAAAGTTGGTTGCAGAAGTTGTGGGGACATATTTCTTAATGTTTGCTGGTGGAGCAGCAGTGATTGTGAATTTGAGCAAAGATAAAGTCATTACTTTCCCTGGGACTGCAATTGTTTGGGGTTTGGCTGTAATGGTTATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTTAACCCTGCTATCACCATTGCCTTTGCTACTACTAAGAGATTTCCAATAAAACAGGTACCAGCATATGTGATAGCTCAAGTTGTTGGCTCAACATTGGCATGTGGGACACTTAGGCTAATATTCAATGGAGAAGAAGAACATTTTGCAGGGACACTCCCAAGTGACTCATATTTGCAGACATTTGTGATTGAATTCATTACCACATTTTACCTCATGTTTGTGGTCTCTGGCGTTTCCACTGACAATAGAGCCATCGGTGAACTTGCTGGACTTGCTGTTGGTGCCACTGTGCTTCTCAATGTCATGCTTGCAGGGCCAATTACAGGGGCATCCATGAACCCAGCCAGAAGCTTGGGACCTGCCATAGTATCAAGGCAATTCAAAGGGATATGGATATACATGGTGGCTCCCATTTTAGGGGCAATTTTAGGGGCTTTGGCCTACAACACCATTAGATTCACAGACAAACCTCTAAGAGAGATCACCAAAAATGCTTCTTTCTTCAAAGTAGGATCACAAACTCCCAATTGA 828 41.91 MAEISGTTNGHVSLNIKHESTPNITTTMQPTKDCSSVFFIQKLVAEVVGTYFLMFAGGAAVIVNLSKDKVITFPGTAIVWGLAVMVMVYSVGHISGAHFNPAITIAFATTKRFPIKQVPAYVIAQVVGSTLACGTLRLIFNGEEEHFAGTLPSDSYLQTFVIEFITTFYLMFVVSGVSTDNRAIGELAGLAVGATVLLNVMLAGPITGASMNPARSLGPAIVSRQFKGIWIYMVAPILGAILGALAYNTIRFTDKPLREITKNASFFKVGSQTPN 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23582304 23586135 + Sed0020518.1 Sed14g1536 737254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1536 275 Gene3D Glycerol uptake facilitator protein. 7 263 IPR023271 -
Sed14g1536 275 PANTHER AQUAPORIN NIP2-1 26 255 IPR034294 -
Sed14g1536 275 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 Pfam Major intrinsic protein 35 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 SUPERFAMILY Aquaporin-like 37 261 IPR023271 -
Sed14g1536 275 CDD MIP 41 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Sed14g1536 275 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed14g1536 275 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1358 Sed-Chr6:37728624 Sed14g1536 Sed-Chr14:23582304 1.90E-77 dispersed
Sed08g1332 Sed-Chr8:27656210 Sed14g1536 Sed-Chr14:23582304 1.20E-55 dispersed
Sed14g1536 Sed-Chr14:23582304 Sed14g1537 Sed-Chr14:23588391 3.10E-112 tandem
Sed10g0202 Sed-Chr10:1175963 Sed14g1536 Sed-Chr14:23582304 4.00E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1536 K09874 - csv:101219297 414.846