Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1540 ATGGAGAAGTTTGAGGTTGTGGAAGGAAAAGTGGACTGGAAGGGAAGATCAGCTTTCAAACATAAACATGGAGGAACTAAATCTTCTTTGCTCATACTAGCTGCATTCGGTTTCGAGAATATGGCAACCTTTGCGCTTGCAGTGAACTTGATTACGTATTTCAATACTGTGATGCATTTTGAACTAGCCGATGCGGCGAACCAGCTGACGAACTACATGGGTACTGCTTACATTCTCTCTATTCTGATGGCTGTTCTTGCAGACACATACTTGGGCAGATTCAAAACTGTCGTCATCTCTGGCTGCCTCGAGTTTCTGGCGCTAATATTGCTCATGATACAAGCTCACTACCCGAATCTCAAGCCAAAGCCTTGCAATATGTTTGATAAACAATCCCACTGTGAGACAATTGGAGGAGGAAATGCTGCCCTTCTCTATGTTGCTCTCTACATATTGGCTGTTGGCAGTGCCGGGATTAAGGCTGCATTACCATCACATGGTGCTGATCAGTTTGATGAAAATGACCCCAAGGAGGCAATGGAAATGTCTAGTTTCTTCAACCACCTCTTGTTAGGAATTTGCCTCGGCGGCGCTGCTAGTTTAACACTAATCGTGTGGATCCAAAGCTACAAAGGTTGGGACTGGGGTTTAGGGATATCTTCCGCAGCCATCTTTTTCGCCATGGTCGTCTTTATTGCCGGGTTGCCACTGTACCGTATGCATATTGTTTCTGGGTCCAGTGCAATCGTCCAAATTCTACAGGTATACGTTGCAGCCATTCGTAATCGAAACCTCGTCCTTCCCGAAGACTCTGTAGATCTTTATGAGATTGAAGTGGACAAGGAGGCTGCAATGGAAGAAGACTTTCTGCCTCATAGAGACATTTACAGGTTTCTAGACAAAGCGGCAATTCAAGAAACACCTTACGTGCAAGAACAAACGCCAAAAGCTACAAGCCCATGGAAACAATGCAGAGTAACCCAAGTAGAAAACGCAAAAATAATCCTAAGCATGGTACCCATTTTCTGCTGCACAATCACAATGACCCTTTGTTTAGCACAACTCCAAACCTTCTCAATCCAACAAGGCCTCACAATGAACACCAAACTCACAAACACATTCCAAATCCCCCCACCCTCCCTCATCATCATCCCAGTCCTCTTCATCATCCTCATCGTCCCAATCTACGACAAGATCTTCGTCCCCGTAACCCGAAAACTCACCAAAGTCCCCACAGGAATCACACACTTACAGCGCGTCGGCGTCGGGTTAGCCCTATCCAGCATTTCGATGGCGGTCGCCGCGCTGATGGAGTCGAAGCGAAAGGGCGTTGCGAGAAACCGCAACATGCTCGACGCAACGCCGGTAATTCAGCCATTGCCGATCAGTATCTTCTGGTTGTCGTTTCAATTCTTCATATTTGGAATTGCGGATTTGTTTACCTATGTGGGGTTGCTTGAATTCTTCTACTCTGAAGCGCCGAAGGCTTTGAAATCTGTTTCGACTTGCTTTCTTTGGAGCTCCATGGCTTTGGGGTACTTCTCGAGCACCATTGTTGTGAAGGTTGTGAACTTTGCTACAATGGGTATCACCAGAAATGGCGGGTGGCTGATTGGGAATAACATTAATCGGAATCATTTGAATCTTTTCTACTGGTTGCTTTCGATCTTGAGTTTGGTTAATTTCTTTGTTTATGTGTTTGTTGCTAAGAGATACAGATATCGGAGCCGGAAATGA 1737 45.6 MEKFEVVEGKVDWKGRSAFKHKHGGTKSSLLILAAFGFENMATFALAVNLITYFNTVMHFELADAANQLTNYMGTAYILSILMAVLADTYLGRFKTVVISGCLEFLALILLMIQAHYPNLKPKPCNMFDKQSHCETIGGGNAALLYVALYILAVGSAGIKAALPSHGADQFDENDPKEAMEMSSFFNHLLLGICLGGAASLTLIVWIQSYKGWDWGLGISSAAIFFAMVVFIAGLPLYRMHIVSGSSAIVQILQVYVAAIRNRNLVLPEDSVDLYEIEVDKEAAMEEDFLPHRDIYRFLDKAAIQETPYVQEQTPKATSPWKQCRVTQVENAKIILSMVPIFCCTITMTLCLAQLQTFSIQQGLTMNTKLTNTFQIPPPSLIIIPVLFIILIVPIYDKIFVPVTRKLTKVPTGITHLQRVGVGLALSSISMAVAALMESKRKGVARNRNMLDATPVIQPLPISIFWLSFQFFIFGIADLFTYVGLLEFFYSEAPKALKSVSTCFLWSSMALGYFSSTIVVKVVNFATMGITRNGGWLIGNNINRNHLNLFYWLLSILSLVNFFVYVFVAKRYRYRSRK 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23609642 23612488 + Sed0020950.1 Sed14g1540 737258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1540 578 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 22 576 - GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Sed14g1540 578 Gene3D MFS general substrate transporter like domains 1 578 IPR036259 -
Sed14g1540 578 Pfam POT family 94 528 IPR000109 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed14g1540 578 SUPERFAMILY MFS general substrate transporter 29 576 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1540 K26548 - - mdm:103435119 843.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0449 Sed-Chr11:4172873 Sed14g1540 Sed-Chr14:23609642 1.10E-129 dispersed
Sed11g0986 Sed-Chr11:24764972 Sed14g1540 Sed-Chr14:23609642 6.10E-90 dispersed
Sed12g0451 Sed-Chr12:2715697 Sed14g1540 Sed-Chr14:23609642 4.80E-94 dispersed
Sed12g1932 Sed-Chr12:30439028 Sed14g1540 Sed-Chr14:23609642 3.10E-117 dispersed
Sed12g1933 Sed-Chr12:30439161 Sed14g1540 Sed-Chr14:23609642 3.30E-113 dispersed
Sed13g1099 Sed-Chr13:9896157 Sed14g1540 Sed-Chr14:23609642 5.70E-119 dispersed
Sed14g1540 Sed-Chr14:23609642 Sed02g1445 Sed-Chr2:50506871 1.60E-91 dispersed
Sed14g1540 Sed-Chr14:23609642 Sed12g1931 Sed-Chr12:30436539 3.20E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g500 . . . . . . . . . . . Cma11g00164 . Car11g00136 Sed14g1540 . Cpe04g01516 Bhi02g00348 Tan09g2161 Cmetu04g2777 . Hepe09g0138 . . . . . . . . . . . Cone13ag0087 Cone19ag0089 . . . . . . . . . . . . . . Cmo11g00146 . . . . . . . . . . . . . . . . . . . . Lsi06g01486 Csa01g00214 Chy02g02518 Cme02g01905