Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1542 ATGTTCCGCGTAGCAGCTTGGCGTGGAACTGAGGTTGCTGTGAAAGTGCTTGGAGAAGATCTGTTCACTGACGAAGATAAAGTGAAGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGTCACCCAAATGTCGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGCCCGATGATGATCATTACAGAATATTTGCCAAAGGGAGATCTTCGAGCATTATTGAGTAGAAAAAGAGCAATAAAAACAATGACTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCACGAGAACAAGCCAGCACCAATTATTCATTGTAATCTCGAGCCTTCAAATATTCTGAGGGATGGTTCTGGCCACCTGAAAGTAGCGAACTTTGGAGTTAGCAAGTTATTGACAGTTAAAGAAGATAAACCATCTACTTGTTCACATACTTCTCGAAGATATGAGGCTCCCGAGGTTTTCAAAAATGAAGAATATGATACGAAGGCCGACGTATTTTCATTTGCTTTGATTCTACAAGAGATGATCGAGGCCTGCCCTCCATTTCCTGATGAGCCAGATAGCAAAGTTCCTAAATTACATGCGGCAGGAGAACGGTCTCCATTTAGAGCATCACTTAAGTGTTATGCAAATGGACTAAAAGAACTAATTGAAGAATGCTGGAACGATAAGCCAGCTAAGAGACCAACCTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAATCGATTTGGTCATAAGAGGCGCTGGAAGGTTAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGCTGAAGAGAGATCGTTCGCGTCGAAGCAGTTTCAATCTGTCGACACATTCTTCTGCCAGCAAACTGGTCGTTGATTTTGGAATTCGTTTGAGTTTCTGGAATGAGAAACACCTGAAACATTGTTTATTAAAAACCTTTGAATCTCATATGGCATTTATGGGGTTTAGGTTTGATTGCTTTGAAGCACTTCACACTCAGCCTCTTTTGAGGAATTTAAGTCATGCGTTCGAATCCCTTCTAATTGTTGTAATCTCAAAAACAAAAAGAAAAAACAAGAAAAAGGTAAGCATATCAAACCATACATTATTAAAGTCATTTACCATTGAATATTGTATGTTTGTCAAATCTTTATGTCTATCTCTTTCTTTCTTTTTATTTTGTTCTTTATATTCGTGCGTATCTGGATCAACTTATATGCACTTTAATTATAAAAATGTATATTTGGATATTGAAAGATCAATTTTTTGCCCTCAAAGCTGTAAAGATACTAATAAAGGGTACAAAAATCAAGAAGAGAGGATGTCAAGCTCATCTCAGAGGAAGCTGGGAAGAGGAAAAATTGAGATTAAGAGGATCGAAAACACAACGAATCGTCAAGTAACTTTCTGCAAGAGAAGAAATGGGCTGCTAAAAAAAGCCTATGAGCTTTCTGTTTTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCGACCCGTGGCCGCCTCTTCGAGTATGCTAGCAACAGTGTAAAAGAAACAATTGATAGGTATAAAAAGGCTACCTCAGATTCCTCAAATACTGGATCTACTTCTGAAGCTAACATTCAGTTTTACCAGCAAGAAGCTGCTAAACTTCGAATTCAGATTGGTAATTTGCAGAACACAAACAGGAATCTGCTTGGTGAATCTATAAGTTCTTTGTGCATAAAAGAACTGAAAACCCTGGAGACCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTTCTCTTTGCTGAAATTGAGTACATGCAGAAAAGGGAACTTGATTTGCACAACAACAATCAGCTGCTCCGAGCCAAGATATCTGAGACTGAAAGAAATGGCAACATGATGGGAGGAGATCAATTTGACTTGATGCAATCTCAACCGTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAACATAACCAACAGTATCCTCGTCAAGACAACATGTCTCTTCAGTTAGTTTAA 2025 38.81 MFRVAAWRGTEVAVKVLGEDLFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIITEYLPKGDLRALLSRKRAIKTMTVVRLALDIARGMNYLHENKPAPIIHCNLEPSNILRDGSGHLKVANFGVSKLLTVKEDKPSTCSHTSRRYEAPEVFKNEEYDTKADVFSFALILQEMIEACPPFPDEPDSKVPKLHAAGERSPFRASLKCYANGLKELIEECWNDKPAKRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSTHSSASKLVVDFGIRLSFWNEKHLKHCLLKTFESHMAFMGFRFDCFEALHTQPLLRNLSHAFESLLIVVISKTKRKNKKKVSISNHTLLKSFTIEYCMFVKSLCLSLSFFLFCSLYSCVSGSTYMHFNYKNVYLDIERSIFCPQSCKDTNKGYKNQEERMSSSSQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLFEYASNSVKETIDRYKKATSDSSNTGSTSEANIQFYQQEAAKLRIQIGNLQNTNRNLLGESISSLCIKELKTLETKLEKGISRIRSKKNELLFAEIEYMQKRELDLHNNNQLLRAKISETERNGNMMGGDQFDLMQSQPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23620914 23636015 + Sed0004665.1 Sed14g1542 737260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1542 674 SMART madsneu2 453 512 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 SUPERFAMILY SRF-like 454 527 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 CDD MADS_MEF2_like 454 530 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed14g1542 674 Gene3D Phosphorylase Kinase; domain 1 2 66 - -
Sed14g1542 674 Coils Coil 576 596 - -
Sed14g1542 674 FunFam agamous-like MADS-box protein AGL11 465 548 - -
Sed14g1542 674 SUPERFAMILY Protein kinase-like (PK-like) 5 248 IPR011009 -
Sed14g1542 674 Gene3D - 465 544 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 Coils Coil 539 566 - -
Sed14g1542 674 FunFam serine/threonine-protein kinase STY46-like 1 67 - -
Sed14g1542 674 Gene3D Transferase(Phosphotransferase) domain 1 67 295 - -
Sed14g1542 674 ProSiteProfiles K-box domain profile. 539 629 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed14g1542 674 CDD STKc_MAP3K-like 7 244 - -
Sed14g1542 674 PRINTS MADS domain signature 455 475 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 PRINTS MADS domain signature 490 511 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 PRINTS MADS domain signature 475 490 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1542 674 ProSitePatterns MADS-box domain signature. 455 509 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 462 509 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 Pfam K-box region 536 623 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed14g1542 674 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 245 IPR051681 GO:0004674(PANTHER)
Sed14g1542 674 ProSiteProfiles MADS-box domain profile. 453 513 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1542 674 Pfam Protein tyrosine and serine/threonine kinase 9 244 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2121 Sed-Chr10:37691019 Sed14g1542 Sed-Chr14:23620914 1.70E-68 dispersed
Sed13g0184 Sed-Chr13:1200419 Sed14g1542 Sed-Chr14:23620914 2.10E-28 dispersed
Sed13g0185 Sed-Chr13:1200741 Sed14g1542 Sed-Chr14:23620914 2.90E-30 dispersed
Sed13g0187 Sed-Chr13:1215684 Sed14g1542 Sed-Chr14:23620914 1.70E-33 dispersed
Sed14g0141 Sed-Chr14:1546510 Sed14g1542 Sed-Chr14:23620914 1.40E-30 dispersed
Sed14g1542 Sed-Chr14:23620914 Sed04g3094 Sed-Chr4:41915379 5.00E-39 dispersed
Sed10g0194 Sed-Chr10:1137633 Sed14g1542 Sed-Chr14:23620914 7.50E-110 wgd
Sed14g1542 Sed-Chr14:23620914 Sed08g2714 Sed-Chr8:39061769 2.10E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40661 PF07714 PK_Tyr_Ser-Thr 4.00E-49 CL0016 Sed TF
80216 PF07714 PK_Tyr_Ser-Thr 4.00E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1542 - - - 0.0