Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1556 ATGGAGAAAGAGCCTCTTCTTCCGTACATGAGCCCTAGAGACAAATTCCCTCCTCTTCCTCCTCATCTATGTCCTCTCCCTGAAAATAACGAAATTACCCTTCCAATGACCCCAACCGAGTTCAAAGACCGCTTGATTTTTGGCCCTTGTTCTTCCCCTAAAGACCCTTCTCCCATTTTCGACGCTTTGGCCCTTTCTCGACCCTCAGCCTCATCTTCTCTCCATGATTCATCCACCCTTTCGGACCCGAAATCGCAATCGATTTCGCAACAAAGGATTGTGGATTCCAGTTACTCATGGCACAAAAGCAACCTCCATCGCTCCAAAACCGCGCCGGCCATGGCGGTCATCAACGATGTCGGCAACCCTTCGCAGGTTCCCAAGCCTCAATTTGGTAAACAATCTATAATCCGCCAGGCTGTTGTTCTTCTTGTTGTTTACTTGTCTTTGGGTGTGTTTATCTATTGGATTAATCGTGATAAGTTTTCGGCTACCGAGACTCATCCTGTGGTTGATGCATTCTACTTTTGTATTGTAACCATGTGCACCATTGGGTATGGAGATATCACGCCGAATAGCGCGGCGACGAAGCTGTTTTCGGTTTTGTTTGTGTTGGTGGGGTTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTGAGGAATGTAAAGAGGGGGGTGGTGGAGCATGAATCTGGGAATTCATATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCTTTAGGTGTTGTGATACTTTGTATAGGAGTTGGAATGGGGTTTATGCATTTTATTGAAGACATGGGGTGGTTGGATTCGTTTTATCTTTCAGTCATGTCGGTGACAACGGTTGGATATGGTGATCAGGCATTCAAGTCGATGACTGGTCGTATTTTTGCTTCGATATGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCATTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGACATAGGATGATGGCGAAATGGATACTTGGCCAGGATATGACTGTCTCTGAGTTTCTTGCTGCTGATACTGACAACAATGGCTTTGTGAGTAGGTCAGAATATGTGGTATTCAAGCTGAAGGAGATGGGCAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTTCACTGGCTGATCTCTTGGCAAGTCATCACTGA 1269 44.6 MEKEPLLPYMSPRDKFPPLPPHLCPLPENNEITLPMTPTEFKDRLIFGPCSSPKDPSPIFDALALSRPSASSSLHDSSTLSDPKSQSISQQRIVDSSYSWHKSNLHRSKTAPAMAVINDVGNPSQVPKPQFGKQSIIRQAVVLLVVYLSLGVFIYWINRDKFSATETHPVVDAFYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVVEHESGNSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGFMHFIEDMGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADTDNNGFVSRSEYVVFKLKEMGKVSEKDVMQISNNFDRLDTGKCGKISLADLLASHH 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23749213 23756522 + Sed0017455.1 Sed14g1556 737274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1556 422 ProSitePatterns EF-hand calcium-binding domain. 366 378 IPR018247 -
Sed14g1556 422 Gene3D - 362 420 - -
Sed14g1556 422 PRINTS Two pore domain K+ channel signature 300 309 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed14g1556 422 PRINTS Two pore domain K+ channel signature 179 207 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed14g1556 422 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 141 369 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Sed14g1556 422 Gene3D - 129 243 - -
Sed14g1556 422 Gene3D - 247 356 - -
Sed14g1556 422 FunFam Two-pore potassium channel 5 125 235 - -
Sed14g1556 422 FunFam Two-pore potassium channel 3 245 359 - -
Sed14g1556 422 SUPERFAMILY Voltage-gated potassium channels 252 357 - -
Sed14g1556 422 Pfam Ion channel 143 222 IPR013099 -
Sed14g1556 422 Pfam Ion channel 269 338 IPR013099 -
Sed14g1556 422 SUPERFAMILY Voltage-gated potassium channels 137 222 - -
Sed14g1556 422 SUPERFAMILY EF-hand 361 418 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2744 Sed-Chr7:42532299 Sed14g1556 Sed-Chr14:23749213 8.90E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1556 K05389 - csv:101220017 689.108