Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1557 ATGTCGGACGAAATGTTTAATCTTTTCTCCCCAGGCCTTTTTGATCAAGCGTTTGGCGATCCAGATCCAATGAGTGAATACGATTCTCTAGCGAGAGCTTTCGGGTTCTCGGATGAAGTTTCGGGGACTCCGTTGAATTCGTGCGGTTCGTTGTCGTCTTCGGATGCCGGAGCTGAGGAGGATGAAGGTGGGAAAGATAAGGATAAGGGGATGAAAGAGATGGATGATGGAGGAGAAAGCTCTAAGGCTTCGGGTAAATCGAAGAAGAAAGTAGAGAAGAAAGAGAGAGAACCAAGATTTGCTTTCATGACGAAGAGCGAAGTTGATCATCTTGAAGATGGATACCGATGGAGAAAATATGGACAGAAAGCTGTCAAGAACAGTGCTTTTCCTAGGAGCTATTATAGATGCACAACGCAGAAATGCGGAGTGAAGAAACGTGTAGAGAGATCGTTTGAAGATCCATCCACAGTAATTACAACCTACGAAGGCCAACACAACCACCCAATCCCCCCCACGTTGAGAGGAAATCTGTCGGCCACCGCCGCGTTTCCGCCGTCTATGCTGACACCAATTCCGGTGGTCGGTGGCGGCGCCGCCTTCCTTCCACCGCCGTTTAGCAATGCTTCCGCCAACAATCAGGCCGTCGGCGGTTCGGTTTTTTCACAGAGCAGCTTCGGTTATCCGTATAACGGCCGGCAACCGGGTTATGGGCTTTTGCAGGACATTTACCCGGCCCAGTCGACGTTTTTCAACCAACATAATACGTGA 771 49.55 MSDEMFNLFSPGLFDQAFGDPDPMSEYDSLARAFGFSDEVSGTPLNSCGSLSSSDAGAEEDEGGKDKDKGMKEMDDGGESSKASGKSKKKVEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAFPRSYYRCTTQKCGVKKRVERSFEDPSTVITTYEGQHNHPIPPTLRGNLSATAAFPPSMLTPIPVVGGGAAFLPPPFSNASANNQAVGGSVFSQSSFGYPYNGRQPGYGLLQDIYPAQSTFFNQHNT 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23766438 23768557 + Sed0023311.1 Sed14g1557 737275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1557 256 Gene3D WRKY domain 97 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g1557 256 MobiDBLite consensus disorder prediction 58 98 - -
Sed14g1557 256 MobiDBLite consensus disorder prediction 45 98 - -
Sed14g1557 256 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g1557 256 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g1557 256 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed14g1557 256 FunFam WRKY transcription factor 57 97 171 - -
Sed14g1557 256 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 177 IPR044810 GO:0003700(InterPro)
Sed14g1557 256 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0735 Sed-Chr1:5413448 Sed14g1557 Sed-Chr14:23766438 2.10E-34 dispersed
Sed04g3473 Sed-Chr4:44383313 Sed14g1557 Sed-Chr14:23766438 2.40E-35 dispersed
Sed05g1863 Sed-Chr5:32047521 Sed14g1557 Sed-Chr14:23766438 6.80E-38 dispersed
Sed05g3276 Sed-Chr5:42167882 Sed14g1557 Sed-Chr14:23766438 7.70E-34 dispersed
Sed12g0015 Sed-Chr12:102659 Sed14g1557 Sed-Chr14:23766438 1.10E-27 dispersed
Sed12g0016 Sed-Chr12:102659 Sed14g1557 Sed-Chr14:23766438 1.20E-27 dispersed
Sed12g0763 Sed-Chr12:4605024 Sed14g1557 Sed-Chr14:23766438 1.70E-34 dispersed
Sed13g0848 Sed-Chr13:6213979 Sed14g1557 Sed-Chr14:23766438 9.40E-25 dispersed
Sed14g0501 Sed-Chr14:4948077 Sed14g1557 Sed-Chr14:23766438 2.20E-18 dispersed
Sed14g1557 Sed-Chr14:23766438 Sed08g2207 Sed-Chr8:35866387 4.10E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40662 PF03106 WRKY 6.00E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1557 - - - 0.0