Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1562 ATGGCTGCCTCAACAATGGCTCTCTCTTCCCCATCTCTGGCTGGCCAGGCCATCAAGCTCTCCCCCAATGCCTCTGAGGTTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACCGCCGGCAGGAAGCCAGCTCCCTCCAGCTCCGGCAGCCCGTGGTACGGCCCCGACCGTGTCAAGTACTTGGGACCATTCTCTGGCGAGGCACCATCATACCTCACCGGTGAATTCCCTGGCGACTATGGCTGGGACACTGCTGGACTTTCCGCTGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTCTTGGCTGTGTCTTCCCCGAGCTTCTGTCCCGCAATGGCGTGAAATTCGGCGAGGCCGTGTGGTTCAAGGCTGGATCACAGATCTTCAGCGAGGGAGGATTGGACTACTTGGGAAACTCCAGCTTGGTCCATGCACAGAGCATTTTGGCCATCTGGGCCTGCCAGGTTGTGTTGATGGGTGCCGTTGAGGGCTACCGTATTGCCGGCGGTCCGCTCGGGGAGATCACCGACCCCATCTACCCCGGTGGAAGCTTTGACCCGTTGGGTTTGGCTGATGATCCAGAGGCCTTTGCTGAGTTGAAGGTGAAGGAGCTCAAGAATGGAAGACTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGACCATTGGAGAACTTGGCTGACCACCTTGCAGACCCAGTGAACAACAATGCTTGGGCCTTTGCCACCAACTTTGTCCCTGGAAAGTGA 807 57.25 MAASTMALSSPSLAGQAIKLSPNASEVQGNGRVSMRKTAGRKPAPSSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23798355 23799675 - Sed0001377.1 Sed14g1562 737280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1562 268 FunFam Chlorophyll a-b binding protein, chloroplastic 59 261 - -
Sed14g1562 268 MobiDBLite consensus disorder prediction 18 51 - -
Sed14g1562 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed14g1562 268 MobiDBLite consensus disorder prediction 18 32 - -
Sed14g1562 268 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Sed14g1562 268 SUPERFAMILY Chlorophyll a-b binding protein 51 265 - -
Sed14g1562 268 Gene3D Chlorophyll a/b binding protein domain 59 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2387 Sed-Chr1:17929741 Sed14g1562 Sed-Chr14:23798355 5.10E-53 dispersed
Sed04g3726 Sed-Chr4:46021408 Sed14g1562 Sed-Chr14:23798355 2.50E-119 dispersed
Sed05g2091 Sed-Chr5:34076276 Sed14g1562 Sed-Chr14:23798355 2.80E-118 dispersed
Sed10g0156 Sed-Chr10:961812 Sed14g1562 Sed-Chr14:23798355 8.00E-150 dispersed
Sed10g0157 Sed-Chr10:965751 Sed14g1562 Sed-Chr14:23798355 7.50E-148 dispersed
Sed10g1659 Sed-Chr10:33259814 Sed14g1562 Sed-Chr14:23798355 1.60E-59 dispersed
Sed13g1162 Sed-Chr13:14698087 Sed14g1562 Sed-Chr14:23798355 9.50E-95 dispersed
Sed14g1562 Sed-Chr14:23798355 Sed14g1563 Sed-Chr14:23801374 1.40E-154 tandem
Sed10g0155 Sed-Chr10:959200 Sed14g1562 Sed-Chr14:23798355 5.70E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1562 K08912 - csv:101213845 517.694