Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1569 ATGGCGGCACTGAGAAAACTGGCGCAATTGAAACCCATAGCAGAAGAAGCATTAGCCGGAACAGTGTTCTTAGCCAAATTCCTCGGCGGCCTTCACGTCGCCAACACATACGTCTGCACCGTCGCTCTCACCTACGGTCCCAGCATGCTCCCTACTCTGAATCTAACCGGCGATTACATCTTGGCCGAACGAATTTCAACTCGTTTTGGCAGAGTCGGCGTTGGAGATGTTGTTCTTGTTAGGTCGCCGGAGAACCCTCGTAAAGTAATGGCGAAACGGTTGATGGGTATGGAGGGTGATTCTGTTACCTATGTTGTGGATCCGAAGAATAGTGATTGGTGTGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGGGATAATATCTATGATTCAAAGGATTCAAGACAATTTGGGGCTGTCCCATATGGTCTTCTGCAAGGGAAAGTATTCTGGAGGGTATGGCCACCTAAAAGTTTCGGACGGTTGGAGAAGAGAAAATTGGACGAGACAGTCTTGTGA 528 48.48 MAALRKLAQLKPIAEEALAGTVFLAKFLGGLHVANTYVCTVALTYGPSMLPTLNLTGDYILAERISTRFGRVGVGDVVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDWCETVVVPKGHVWIEGDNIYDSKDSRQFGAVPYGLLQGKVFWRVWPPKSFGRLEKRKLDETVL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23826932 23830057 + Sed0022794.2 Sed14g1569 737287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1569 175 CDD S26_SPase_I 46 152 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Sed14g1569 175 Gene3D Umud Fragment, subunit A 34 169 - -
Sed14g1569 175 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 167 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Sed14g1569 175 Pfam Signal peptidase, peptidase S26 32 105 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Sed14g1569 175 Pfam Signal peptidase, peptidase S26 115 157 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Sed14g1569 175 FunFam Inner membrane protease subunit 1 35 164 - -
Sed14g1569 175 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
Sed14g1569 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Sed14g1569 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Sed14g1569 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1569 Sed-Chr14:23826932 Sed14g1572 Sed-Chr14:23826932 1.50E-72 dispersed
Sed14g1568 Sed-Chr14:23826932 Sed14g1569 Sed-Chr14:23826932 2.50E-99 tandem
Sed14g1569 Sed-Chr14:23826932 Sed14g1570 Sed-Chr14:23826932 1.50E-72 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1569 K09647 - csv:101209167 300.056