Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1573 ATGGCCAAGAAGCAAACGAAGGGCCGCCAAAAGATCGAGATGAAGAAGATAGAGAACGAAGACGACCGGCTCATAACATTCTCAAAGCGCCGGTCGGGCATCTACAAGAAGGCCAGCGAGCTAGCCACGCTGTGTGGTGCCGAGGTCGGCGTGGTTGTGTTCTCCCCAGCCGGGAAACCATTTTCATTTGCGCATCCGTGCATTGAGGCCGTGGCTAACAAGTTCCTGAACGAAACTCCACAGCCAAACGACAACATGCACCCGCTCGTGGAGGCGCATCGGCGGTTGAGGATCAACGAGCTGAACCAGCAGCACAACCAGCTTCTGAGCCAACTCGATGGAGAGAAGGAGAGAGGGAAGGCGCTCGAGAAAGTGAAGAAAGTGAGGGGAAACCACGAGCGGGGCTGGTGGGAGACGCCGACCGAGGAACTCGGCACCGAAGAATTGCAACAAGTTGATGGAATGTTGGGAGATTTGTATCAAAATGTTTGTGATCAGCTGAAAGAGAGAGGAGTTATTGGATCATCAGGTTCAAGCTTGATGGGGTTTAACAATGGAGGTGAAGAAACTATTCCTTTTCATATTTTGGGAAGTGCTTCTTCTAATTCTTCTACTACTTATCGGCTTCCTCCTCATCAATTTGGTTATGGGCATCATCCATGA 663 50.83 MAKKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPCIEAVANKFLNETPQPNDNMHPLVEAHRRLRINELNQQHNQLLSQLDGEKERGKALEKVKKVRGNHERGWWETPTEELGTEELQQVDGMLGDLYQNVCDQLKERGVIGSSGSSLMGFNNGGEETIPFHILGSASSNSSTTYRLPPHQFGYGHHP 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 23831013 23831714 + Sed0027724.1 Sed14g1573 737291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1573 220 Coils Coil 98 118 - -
Sed14g1573 220 Gene3D - 91 171 - -
Sed14g1573 220 SMART madsneu2 7 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Sed14g1573 220 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 CDD MADS_MEF2_like 8 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed14g1573 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 151 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed14g1573 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 Gene3D - 19 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed14g1573 220 MobiDBLite consensus disorder prediction 201 220 - -
Sed14g1573 220 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1151 Sed-Chr7:8633552 Sed14g1573 Sed-Chr14:23831013 1.20E-37 dispersed
Sed13g0413 Sed-Chr13:2713164 Sed14g1573 Sed-Chr14:23831013 2.20E-36 dispersed
Sed14g1573 Sed-Chr14:23831013 Sed10g0803 Sed-Chr10:5806069 1.50E-13 dispersed
Sed10g0152 Sed-Chr10:943992 Sed14g1573 Sed-Chr14:23831013 3.90E-82 wgd
Sed14g1573 Sed-Chr14:23831013 Sed08g2683 Sed-Chr8:38899512 2.20E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g784 . . . . . Bpe12g00730 . . . . . . . . . . . . . . . . . . Cla10g00956 Cam10g0979 Cec10g1010 Cco10g0973 Clacu10g1001 Cmu10g1783 Cre10g1157 . . . . . . . . . . . . . . . . Sed14g1573 Cmo04g00457 . . . . . . Cpe01g00383 Bhi11g01095 Tan01g0599 Cmetu07g0995 . Hepe07g0389 Mch10g0403 . . . . . . . . Lsi03g01001 . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40663 PF00319 SRF-TF 1.10E-23 No_clan Sed TF