Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1595 ATGGGTTCTTCTTGTGGGTCTACAAGTTACAGCAAAATGCGAGTTGGGAGGTTCGAGCTTGGCCGAACTCTTGGTGAAGGAAGCTTTGCGAAGGTTAAGTTTGCTCGGAATTGCGACACAGGGGACAATGTGGCTATCAAAATCGTCGATAAAGACAAGATTCTAAAGCATAAGATGATTGGCCAGATTAAACGTGAGATATCAACAATGAAACTCATTAGGCATCCAAATGTCATACGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACTGGGGGGGAACTATTCAAAAAAATCGCAACTAAAGGAAGAATGAAAGAAGATGAAGCAAGAAAATATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGAGGTGTTTATCATCGAGACCTCAAGCCAGAGAATTTATTGTTGGATGCTAGTGGTGTTCTAAAAGTTTCAGATTTCGGATTGAGTGCTCTACCTCAACATGTTCGAGATGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCTGAGGTCATCAACAACAAAGGCTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTTCTCATGGCTGGCTATTTGCCATTTGAAGAACCCAGTCTCATGGCATTGTACAAAAAGATATTCAAGGCCGACTGCACGTATCCCCCATGGTTCTCTTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCGTTAACTAGGATTACAATTGCTGAGGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAACCTCCCGTTTTCGAAAATGCTGAAATCAACCTTGATGATGTTGATGACATCTTTAATGAATCAGGGGCCACTCATAACCTAGTGGTTGAGAGAAGAGAAGACAAACCCGCGTCACCAGTCACCATGAATGCATTTGAGCTCATCTCAAAATCCCGGGGCCTCGATCTCGCCTCTCTTTTCGAGAAGCAAATGGGGCTAATTAAACGTGAAATGAGGTTCACATCCAATTGTCCAGCCGATGAAATAATTTCCAAGATCGAAAAGACTGCAGTTCCTTTGGGGTTTGATGTTAAGATTAACAACTGCAAGATGAAGCTCCAAGGGGAAAAAACAGGACGTAAAGGTCATTTATCAGTTTCAACAGAGATTTTTCAGGTTGCTCCTTCTTTGCATATGGTGGAGCTTCGGAAAGCCGGGGGCGATACTCTAGAATTTCAGAAGTTCTATAGTAGCCTCTCAACTGGACTGAAAGATATTGTGTGGCGATACGGAGACGAGATGGAGCAGGAAAGTAATGATAATTGTTCTATGTGA 1368 41.96 MGSSCGSTSYSKMRVGRFELGRTLGEGSFAKVKFARNCDTGDNVAIKIVDKDKILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFKKIATKGRMKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDASGVLKVSDFGLSALPQHVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEEPSLMALYKKIFKADCTYPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPVFENAEINLDDVDDIFNESGATHNLVVERREDKPASPVTMNAFELISKSRGLDLASLFEKQMGLIKREMRFTSNCPADEIISKIEKTAVPLGFDVKINNCKMKLQGEKTGRKGHLSVSTEIFQVAPSLHMVELRKAGGDTLEFQKFYSSLSTGLKDIVWRYGDEMEQESNDNCSM 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24086252 24092139 + Sed0014343.1 Sed14g1595 737313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1595 455 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 428 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed14g1595 455 FunFam Non-specific serine/threonine protein kinase 314 440 - -
Sed14g1595 455 CDD STKc_SnRK3 17 272 - -
Sed14g1595 455 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Sed14g1595 455 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Sed14g1595 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed14g1595 455 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1595 455 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Sed14g1595 455 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1595 455 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165(InterPro)
Sed14g1595 455 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Sed14g1595 455 FunFam Non-specific serine/threonine protein kinase 11 314 - -
Sed14g1595 455 CDD CIPK_C 321 436 - -
Sed14g1595 455 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed14g1595 455 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Sed14g1595 455 Gene3D Kinase associated domain 1, KA1 315 440 - -
Sed14g1595 455 Pfam NAF domain 317 376 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2653 Sed-Chr8:38683291 Sed14g1595 Sed-Chr14:24086252 1.30E-197 dispersed
Sed12g0058 Sed-Chr12:321760 Sed14g1595 Sed-Chr14:24086252 2.40E-175 dispersed
Sed12g0727 Sed-Chr12:4347372 Sed14g1595 Sed-Chr14:24086252 9.60E-116 dispersed
Sed12g0728 Sed-Chr12:4348608 Sed14g1595 Sed-Chr14:24086252 1.40E-107 dispersed
Sed14g1514 Sed-Chr14:23449645 Sed14g1595 Sed-Chr14:24086252 5.40E-125 dispersed
Sed14g1595 Sed-Chr14:24086252 Sed08g2652 Sed-Chr8:38683291 3.20E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80218 PF00069 Pkinase 9.20E-74 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1595 - - - 0.0