Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1598 ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCTCAGGAAGGGGAGAAAAGAGTTCTTAACTCAGAGCTTTGGCATGCTTGTGCTGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGCTGTTTACTTTCCACAGGGTCATAGTGAGCAGGTTGCCATATCAACCAACAAAGAAGTGGATGCCCATATTCCTAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACCATGCATGCAGACGTCGAGACGGATGAAGTGTATGCCCAGATGACGTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCCTATCTTCCAGCTGAGTTGGGTGGCCCCAGCAAACAACCAACCAACTATTTTTGTAAAACTTTGACAGCAAGTGACACAAGTACTCATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTGTTTCCTCCATTGGACTTCACTCAGCAGCCACCTTGTCAGGAGTTGATTGCAAGAGATCTACACGATAACGAATGGAAATTTAGGCATATCTTTCGAGGCCAGCCCAAAAGGCATCTTCTTACTACTGGATGGAGTGTGTTCGTAAGTGCAAAGCGGCTTGTTGCTGGCGATTCCGTGATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACAGTGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTTCTACAAATAGTCGGTTTACGATATTTTATAATCCAAGAGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTTAAAGCTGTCTACCATACCCGCGTTTCTGTTGGTATGCGTTTTAGAATGCTATTTGAAACTGAAGAATCAAGCGTTCGTCGATACATGGGCACTATCACCGGCATCAGTGATTTAGATTCTGCTCGGTGGCCTAACTCACACTGGCGCTCGGTTAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAACCAAGGGTTTCCTTATGGGAGATCGAGCCACTAACAACTTTCCCGATGTATCCGTCTCCTTTTCCTCTCCGGCTTAAACGCCCTTGGCCAACTGGATTGCCCTCTTTCCATGGTCTCAAAGAGGATGATATGGGATTAAATTCTCAACTCATGTGGCTACGGGGAGATGCTTTTGATCGAGGAATGCAACCTATGAACCTCCATGGAATTGGAGTTGCACCATGGATGCAGCCGAGGTTCGATGCTTCTATGGCTGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCAGCTGCTCTGCAGGAGATGAGAGCCGTAGATCCCGCCAAGGCGCAGGCGGCATCGCTTCTTCAATTCCAACAAACACAAAATCTTCCCAACAGACCTGCTTCTTTCATGGCATCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCAACAGACCTTTCTTCAAAGTGATGAAAACCAACACCGCTCTCATTCTCAGGCCCAAACCCAGCCTACTGTTCTTCAGCAGGAGATACAGCATCAAACATTCAACAACCAGCAGCAGCAACGACAACAGCAGCAACAACCGCATCAGCAACCGCAACAGCAAGTGTTTGATCGGCAACCGCAACAGCAACAGCAACAGCAACCACGTCAGCAACCACAACAGCAAGTGTTTGATCATCAACAAATTCCAAGTAGCATCACGACAATGTCGCAGTTTGGTTCTGCATCCCAATCTCAAGCCCAATCCCTGCAAACTATTCCTTCATTATGCAGGCAGCAGAGTTTTTCTGATTCAAATGCCAACCACGTGACAAGTCCAATCATTTCACCATTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCGTCTCAGTTGCTTAATCTCTCTAGAACCAACCCCATGATACATTCATCTACATGGCCATCTAAGCGAGCTGCACTCGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTCCCCAAGGGGAAAATATGGGGACAACTCAGACTAATATCTCTCCGAATGCGATTTCATTGCCGCCTTTTCCTGGTAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCACAAAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCAAATCTTAGGGGAATTTGCAGTGACAATGACTCGACAACTATACCGTTTTCGTCCAATTATGTGAATACTGTCGCCACCAACTTCTCTGCTGATCCAACTGGAACGCCTTCCAATTGCATTGAGGATCCAGGTTTCTTGCAGTCTCCAGATAACACAGGCCAAGTAAATCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGTTACGCAGTGAGCTCGCTTTCATGTTCAGTCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACATCCTTCTTCTCGGCGACGATCCGTGGCCGGAGTTTGTCAACAGTGTGTGGTGTATCAAAATACTCTCACCACAGGAAGTGCAGGAGATGGGCAAACGAGGTCTAGAGCTCTTGAACTCGGTACCGATTCAGAGGCTCTCGAATGGCAGTTGTGATAACTATGCCAACAGACAGGAGTCATCCCGAAATTTGAGTACCGGTATAACATCCGTCGGGTCTCTCGAGTACTGA 2784 47.16 MRLSTAGFSPQAQEGEKRVLNSELWHACAGPLVSLPAVGSRAVYFPQGHSEQVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGGPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPCQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAASTNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDMGLNSQLMWLRGDAFDRGMQPMNLHGIGVAPWMQPRFDASMAGLQPEIYQAMAAAALQEMRAVDPAKAQAASLLQFQQTQNLPNRPASFMASQMLQQPQPQPQQTFLQSDENQHRSHSQAQTQPTVLQQEIQHQTFNNQQQQRQQQQQPHQQPQQQVFDRQPQQQQQQQPRQQPQQQVFDHQQIPSSITTMSQFGSASQSQAQSLQTIPSLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLSRTNPMIHSSTWPSKRAALDPLLSSGNSQFVLPQGENMGTTQTNISPNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDNDSTTIPFSSNYVNTVATNFSADPTGTPSNCIEDPGFLQSPDNTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAFMFSLEGELEDPLRSGWQLVFVDRENDILLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24132416 24139145 - Sed0020957.1 Sed14g1598 737316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1598 927 SUPERFAMILY CAD & PB1 domains 787 868 - -
Sed14g1598 927 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed14g1598 927 Gene3D - 790 882 - -
Sed14g1598 927 Gene3D - 125 228 IPR015300 -
Sed14g1598 927 FunFam Auxin response factor 125 229 - -
Sed14g1598 927 FunFam Auxin response factor 788 882 - -
Sed14g1598 927 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
Sed14g1598 927 Pfam AUX/IAA family 791 882 IPR033389 -
Sed14g1598 927 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Sed14g1598 927 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Sed14g1598 927 Gene3D - 291 363 - -
Sed14g1598 927 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 884 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed14g1598 927 ProSiteProfiles PB1 domain profile. 793 877 IPR053793 -
Sed14g1598 927 MobiDBLite consensus disorder prediction 484 571 - -
Sed14g1598 927 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Sed14g1598 927 FunFam Auxin response factor 291 363 - -
Sed14g1598 927 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1691 Sed-Chr1:12293061 Sed14g1598 Sed-Chr14:24132416 0.00E+00 dispersed
Sed03g0925 Sed-Chr3:5736500 Sed14g1598 Sed-Chr14:24132416 7.20E-266 dispersed
Sed03g0926 Sed-Chr3:5736500 Sed14g1598 Sed-Chr14:24132416 6.10E-224 dispersed
Sed11g0596 Sed-Chr11:7021279 Sed14g1598 Sed-Chr14:24132416 8.10E-164 dispersed
Sed11g0597 Sed-Chr11:7025012 Sed14g1598 Sed-Chr14:24132416 3.90E-65 dispersed
Sed13g0775 Sed-Chr13:5620801 Sed14g1598 Sed-Chr14:24132416 6.60E-103 dispersed
Sed13g1578 Sed-Chr13:20953766 Sed14g1598 Sed-Chr14:24132416 7.70E-168 dispersed
Sed14g0406 Sed-Chr14:4240115 Sed14g1598 Sed-Chr14:24132416 6.30E-69 dispersed
Sed14g1492 Sed-Chr14:23266471 Sed14g1598 Sed-Chr14:24132416 4.60E-91 dispersed
Sed14g1493 Sed-Chr14:23266471 Sed14g1598 Sed-Chr14:24132416 4.60E-91 dispersed
Sed14g1598 Sed-Chr14:24132416 Sed08g2648 Sed-Chr8:38656979 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40666 PF02309 AUX_IAA 7.00E-07 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1598 K14486 - csv:101210406 1577.76