Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1616 ATGGCACTTGTTATGCACAAAGATTCACCAAACAAACATATGGATTCAAGCAAATATGTAAGGTATACACCTGAACAAGTTGAGGCTTTAGAGAGGGTTTATTCAGAATGTCCAAAGCCTAGTTCTATCAGAAGGCAGCAACTCATCAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAACAAATCAAAGTTTGGTTTCAAAATCGCAGATGCCGGGAGAAGCAGCGGAAGGAATCATCTCGCCTCCAGAGTGTTAATCGAAAGTTGTCTGCTATGAACAAATTGTTGATGGAAGAGAATGACCGTTTACAGAAGCAGGTGTCACATTTGGTGTATGATAATGGATACATGCGCCAACAGCTGCATAGTGCACCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAATCCAAATCCTCAGCATCCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTTGCAATTGCGGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACCGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACGAAGGTTGCAGAAATCCTTAAAGATCGCCTTTCGTGGTATCGCGACTGTCGCTGCCTTAATGTTTTAAGTGTACTCCCTACTGGAAATGGGGGAACTATAGAGCTCATATATATGCAGACTTATGCTCCAACAACATTAGCAGCTGCACGTGACTTCTGGACTATGAGATATACTAGAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAAAGGTCATTAACATCTTCAATTGGTGGCCCACCAGGTCCTCCATCAACTACTTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCTTGTGACGGCGGTGGATCGATTATTCACATTGTTGATCACCTTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATTCTTGCTCAGAAAACCACAGTTGCTGCATTGCGTCACATTCGACAAATTGCACAAGAGACGAATGGTGAGATTCAATATAGTGGGGGACGTCAACCAGCTGTCTTACGAACGTTTAGTCAGAAACTCTGCAGGGGTTTTAATGATGCGGTCAATGGATTTGCGGATGACGGTTGGTCGCCTATGGGCAGTGATGGTATGGAGGATGTAACAATTGTCATAAACTCATCAGCAAACAAGTTCACTGGATCTCAATACAGCATGTCTATGTATCCCTCGTACGGTGGGGGAGTGATGTGCGCCAAGGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGATCTGAATGGGCAGATTATGGAGTTGATGCCTACTCTGCTGCAAGTTTAAAAGCAAGTCCATATGCTGTTCCATGCGCAAGGCCTGGTGGCTTTCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCATACTGTGGAGCATGAAGAGTGTCTGGAGGTTGTTCGGCTGGAGGGCCTCGCATTCTCCCCTGAAGAAGTCGCTTTGGCCGGACGAGATATGTACTTGCTGCAGCTCTGTAGTGGGGTTGATGAGAATGCAGTTGGTGCTTGTGCTCAGCTTGTGTTTGCACCTATAGACGAATCGTTTGCTGATGATGCTCCTCTACTTCCTTCTGGATTTCGCGTCATACCGCTTGATCCAAAAATGCAGGATGAACCTAATGCTGCTCGAACATTGGATTTGGCTTCTACTCTTGAAGTTGGTGCCAGTGGTGCACGTTCTGCTGGTGAAACTGATCTTAGCAGCTACAACCTTAGGTCGGTCTTGACTATCGCCTTCCAGTTCACTTTTGAGGATCACTTGCGAGAAAATGTGGCTGCGATGGCTCGACAATACGTTCGTAGTGTTGTGGCGTCTGTCCAGAGGGTTGCCATGGCCATTTCCCCATCACGGTTGAGTTCAAATATGGGACTCAGGTCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGCTCGATGGATTTGCCGAAGCTACCGGATCCATGTTGGAGCCGAGCTCCTACAAGCCGATTCCCAATCTGGAGATGCCATGTTGAAGCAGCTCTGGCATCACTCAGATGCAATCATGTGTTGCTCCGTCAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAGTGCTCGACAAAATCCTCGATGATGCGGGTCGGAAGATCCTTTGTTCTGAGTTCCCCAAAATAATGCAGCAGGGATTCACGAATCTGCCATCAGGCATTTGCATATCGAGTATGGGGCGACCCATTTCTTATGAGCAAGCTGTTGCCTGGAAGGTTCTAAATGATGATGATTCCAACCATTGTTTAGCTTTCATGTTCCTAAACTGGTCTTTTGTGTGA 2547 47.0 MALVMHKDSPNKHMDSSKYVRYTPEQVEALERVYSECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYDNGYMRQQLHSAPGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVLPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTRSLEDGSLVVCERSLTSSIGGPPGPPSTTFVRAEMLPSGYLIRACDGGGSIIHIVDHLDLDVWSVPEVLRPLYESSKILAQKTTVAALRHIRQIAQETNGEIQYSGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGMEDVTIVINSSANKFTGSQYSMSMYPSYGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEECLEVVRLEGLAFSPEEVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKMQDEPNAARTLDLASTLEVGASGARSAGETDLSSYNLRSVLTIAFQFTFEDHLRENVAAMARQYVRSVVASVQRVAMAISPSRLSSNMGLRSLPGSPEALTLARWICRSYRIHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIVLDKILDDAGRKILCSEFPKIMQQGFTNLPSGICISSMGRPISYEQAVAWKVLNDDDSNHCLAFMFLNWSFV 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24352331 24357915 - Sed0012952.2 Sed14g1616 737334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1616 848 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Sed14g1616 848 CDD START_ArGLABRA2_like 161 377 - -
Sed14g1616 848 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Sed14g1616 848 Gene3D - 10 85 - -
Sed14g1616 848 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Sed14g1616 848 Pfam MEKHLA domain 703 847 IPR013978 -
Sed14g1616 848 MobiDBLite consensus disorder prediction 123 160 - -
Sed14g1616 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 848 IPR044830 GO:0003700(InterPro)
Sed14g1616 848 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Sed14g1616 848 Gene3D - 200 385 IPR023393 -
Sed14g1616 848 MobiDBLite consensus disorder prediction 123 157 - -
Sed14g1616 848 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Sed14g1616 848 CDD bZIP 70 109 - -
Sed14g1616 848 Coils Coil 83 107 - -
Sed14g1616 848 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Sed14g1616 848 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Sed14g1616 848 SUPERFAMILY Bet v1-like 167 378 - -
Sed14g1616 848 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Sed14g1616 848 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0068 Sed-Chr10:421112 Sed14g1616 Sed-Chr14:24352331 0.00E+00 dispersed
Sed11g0724 Sed-Chr11:11107502 Sed14g1616 Sed-Chr14:24352331 0.00E+00 dispersed
Sed14g1615 Sed-Chr14:24352331 Sed14g1616 Sed-Chr14:24352331 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40668 PF01852 START 5.40E-50 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1616 K09338 - csv:101210154 1575.07