Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1617 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCCGATGAGCAGCAGAAGTACTCTGAATCTGAGAATCCTTCTTCATCAGTCATTAATGAACTAAATCAACCCAGCGTCACAACCCCAAATCAATATTTAACACCTCCACAAGTTGGAGCAGGACATGCTTTGGTGCCCCCTGCTTATCCGTATCCAGATCCTTACTACAGAAGCATCTTTTCTCCATATGATACTCAACCGTATCCTCCACAACCCTATGGTGGGCAACCTATGGTCCATCTTCAACTTATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCCGTTGAAGAGCCTGTTTTTGTGAATGCTAAACAATATCATGGGATTTTACGCCGTCGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCACGAATCTCGACATTTGCATGCATTGAGGAGAGCTCGGGGTTGTGGCGGGCGGTTTCTCAAATCAAATAAAAATGGGAATCAACAAAATGAAGTGGCATCAGGTGATGAATCACAGCTCGATATAAATCTGAATTCTAATAGAAGTGGTGTAGCTTCTTCAGATAACTGA 618 43.53 MTSSVHDYSDNGEADEQQKYSESENPSSSVINELNQPSVTTPNQYLTPPQVGAGHALVPPAYPYPDPYYRSIFSPYDTQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNGNQQNEVASGDESQLDINLNSNRSGVASSDN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24365328 24372561 - Sed0021450.1 Sed14g1617 737335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1617 205 Gene3D - 111 172 - -
Sed14g1617 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 MobiDBLite consensus disorder prediction 170 205 - -
Sed14g1617 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 MobiDBLite consensus disorder prediction 1 48 - -
Sed14g1617 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed14g1617 205 MobiDBLite consensus disorder prediction 21 48 - -
Sed14g1617 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 198 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed14g1617 205 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0067 Sed-Chr10:395872 Sed14g1617 Sed-Chr14:24365328 4.30E-79 dispersed
Sed12g1580 Sed-Chr12:25803734 Sed14g1617 Sed-Chr14:24365328 5.80E-25 dispersed
Sed03g1809 Sed-Chr3:12000700 Sed14g1617 Sed-Chr14:24365328 2.00E-28 transposed
Sed10g0066 Sed-Chr10:395553 Sed14g1617 Sed-Chr14:24365328 4.30E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40669 PF02045 CBFB_NFYA 4.20E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1617 K08064 - csv:101205549 347.436