Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1617 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCCGATGAGCAGCAGAAGTACTCTGAATCTGAGAATCCTTCTTCATCAGTCATTAATGAACTAAATCAACCCAGCGTCACAACCCCAAATCAATATTTAACACCTCCACAAGTTGGAGCAGGACATGCTTTGGTGCCCCCTGCTTATCCGTATCCAGATCCTTACTACAGAAGCATCTTTTCTCCATATGATACTCAACCGTATCCTCCACAACCCTATGGTGGGCAACCTATGGTCCATCTTCAACTTATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCCGTTGAAGAGCCTGTTTTTGTGAATGCTAAACAATATCATGGGATTTTACGCCGTCGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCACGAATCTCGACATTTGCATGCATTGAGGAGAGCTCGGGGTTGTGGCGGGCGGTTTCTCAAATCAAATAAAAATGGGAATCAACAAAATGAAGTGGCATCAGGTGATGAATCACAGCTCGATATAAATCTGAATTCTAATAGAAGTGGTGTAGCTTCTTCAGATAACTGA 618 43.53 MTSSVHDYSDNGEADEQQKYSESENPSSSVINELNQPSVTTPNQYLTPPQVGAGHALVPPAYPYPDPYYRSIFSPYDTQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNGNQQNEVASGDESQLDINLNSNRSGVASSDN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24365328 24372561 - Sed0021450.1 Sed14g1617 737335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1617 205 Gene3D - 111 172 - -
Sed14g1617 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 MobiDBLite consensus disorder prediction 170 205 - -
Sed14g1617 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed14g1617 205 MobiDBLite consensus disorder prediction 1 48 - -
Sed14g1617 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed14g1617 205 MobiDBLite consensus disorder prediction 21 48 - -
Sed14g1617 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 198 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed14g1617 205 MobiDBLite consensus disorder prediction 166 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1617 K08064 - - csv:101205549 347.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0067 Sed-Chr10:395872 Sed14g1617 Sed-Chr14:24365328 4.30E-79 dispersed
Sed12g1580 Sed-Chr12:25803734 Sed14g1617 Sed-Chr14:24365328 5.80E-25 dispersed
Sed03g1809 Sed-Chr3:12000700 Sed14g1617 Sed-Chr14:24365328 2.00E-28 transposed
Sed10g0066 Sed-Chr10:395553 Sed14g1617 Sed-Chr14:24365328 4.30E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g3289 . 1 231 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.0 2.4e-56 216.9
Sed01g3275 . 1 219 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 6.0e-52 202.2
Sed12g1580 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 3.2e-46 183.3
Sed01g3275 . 92 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 62.7 1.7e-39 161.0
Sed14g1617 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.2e-46 184.1
Sed10g0066 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
Sed10g0067 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40669 PF02045 CBFB_NFYA 4.20E-26 No_clan Sed TF