Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed14g1617 | ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCCGATGAGCAGCAGAAGTACTCTGAATCTGAGAATCCTTCTTCATCAGTCATTAATGAACTAAATCAACCCAGCGTCACAACCCCAAATCAATATTTAACACCTCCACAAGTTGGAGCAGGACATGCTTTGGTGCCCCCTGCTTATCCGTATCCAGATCCTTACTACAGAAGCATCTTTTCTCCATATGATACTCAACCGTATCCTCCACAACCCTATGGTGGGCAACCTATGGTCCATCTTCAACTTATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCCGTTGAAGAGCCTGTTTTTGTGAATGCTAAACAATATCATGGGATTTTACGCCGTCGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCACGAATCTCGACATTTGCATGCATTGAGGAGAGCTCGGGGTTGTGGCGGGCGGTTTCTCAAATCAAATAAAAATGGGAATCAACAAAATGAAGTGGCATCAGGTGATGAATCACAGCTCGATATAAATCTGAATTCTAATAGAAGTGGTGTAGCTTCTTCAGATAACTGA | 618 | 43.53 | MTSSVHDYSDNGEADEQQKYSESENPSSSVINELNQPSVTTPNQYLTPPQVGAGHALVPPAYPYPDPYYRSIFSPYDTQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNGNQQNEVASGDESQLDINLNSNRSGVASSDN | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 24365328 | 24372561 | - | Sed0021450.1 | Sed14g1617 | 737335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed14g1617 | 205 | Gene3D | - | 111 | 172 | - | - | |
Sed14g1617 | 205 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 113 | 168 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1617 | 205 | ProSiteProfiles | NF-YA/HAP2 family profile. | 111 | 171 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1617 | 205 | SMART | cbf3 | 110 | 171 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1617 | 205 | MobiDBLite | consensus disorder prediction | 170 | 205 | - | - | |
Sed14g1617 | 205 | PRINTS | CCAAT-binding transcription factor subunit B signature | 114 | 136 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1617 | 205 | PRINTS | CCAAT-binding transcription factor subunit B signature | 145 | 168 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed14g1617 | 205 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Sed14g1617 | 205 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 116 | 136 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Sed14g1617 | 205 | MobiDBLite | consensus disorder prediction | 21 | 48 | - | - | |
Sed14g1617 | 205 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 12 | 198 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Sed14g1617 | 205 | MobiDBLite | consensus disorder prediction | 166 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0067 | Sed-Chr10:395872 | Sed14g1617 | Sed-Chr14:24365328 | 4.30E-79 | dispersed | |
Sed12g1580 | Sed-Chr12:25803734 | Sed14g1617 | Sed-Chr14:24365328 | 5.80E-25 | dispersed | |
Sed03g1809 | Sed-Chr3:12000700 | Sed14g1617 | Sed-Chr14:24365328 | 2.00E-28 | transposed | |
Sed10g0066 | Sed-Chr10:395553 | Sed14g1617 | Sed-Chr14:24365328 | 4.30E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40669 | PF02045 | CBFB_NFYA | 4.20E-26 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed14g1617 | K08064 | - | csv:101205549 | 347.436 |