Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1619 ATGAATAATCGCGCAACGGAACTTGGCAGGCCTGGCTCAGGCAAAAGAAGACTAAGGGACCTATTGCTACAAAAGGATAATCGCTTCTGTGCAGATTGTCGTGCTTTAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTTGGTTCACATATATCTAAGGTGTTATCAGTGACATTAGATGAATGGAGTGATGATGAAATTGATGCCATGATAGAAATTGGAGGAAATTCTTCTGCAAATTCAATATATGAAGCCTTTATTCCTGATGATTATTCAAAGCCTGGACCAGATGCCTCCCATGAACAACGTTCGAAATTTATTCGGTCCAAATATGAACTTCAAGCATTTCTGAAACCTAGCTTGAGAATTTTATCAAATAACTCCGACAAAAGCAATATCCAAGCAAACTTTGCTTCAAAGATCATGAACAGTTTTCGTTCAAATTCTTCACAAAAAGCAAAAGATATGGAAGAGCTTTCTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGAGATATGATGTCGAGTGATCCTTATGTAATCTTGACTCTCGGACAACAGACTGTCCAGACAGGTGTAGTAAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGATGCTATCTGTACCTCAATGTTTTGGATCCTTAAAGTTGCAAGTATACGACTACGACACATTTTCGGCAGACGACATAATGGGAGAAGCAGAAATCGATCTCCAGCCCTTGATAACATCAGCATTGGCATTTGGAGATGCTGGTATGTTTGCAGACATGCAAATTGGAAAATGGCTGAAATCGCACGATAACGCTCTCATAAACGATAGCATCGTCAATATTGTCGAGGGGAAGGTGAAGCAAGAGATGTCACTCAAGCTTCAAAATGTGGAATCAGGAGAACTAGATCTTGAGCTAGAATGGATGTCTCTTTAA 987 39.72 MNNRATELGRPGSGKRRLRDLLLQKDNRFCADCRALDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDDEIDAMIEIGGNSSANSIYEAFIPDDYSKPGPDASHEQRSKFIRSKYELQAFLKPSLRILSNNSDKSNIQANFASKIMNSFRSNSSQKAKDMEELSGLLKVKVIKGTNLAIRDMMSSDPYVILTLGQQTVQTGVVRSNLNPVWNEELMLSVPQCFGSLKLQVYDYDTFSADDIMGEAEIDLQPLITSALAFGDAGMFADMQIGKWLKSHDNALINDSIVNIVEGKVKQEMSLKLQNVESGELDLELEWMSL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24380671 24383916 + Sed0000941.1 Sed14g1619 737337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1619 328 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Sed14g1619 328 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Sed14g1619 328 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Sed14g1619 328 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Sed14g1619 328 CDD ArfGap 18 124 - -
Sed14g1619 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 328 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed14g1619 328 SMART C2_3c 175 270 IPR000008 -
Sed14g1619 328 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Sed14g1619 328 CDD C2_ArfGAP 174 317 - -
Sed14g1619 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 167 264 IPR035892 -
Sed14g1619 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Sed14g1619 328 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Sed14g1619 328 ProSiteProfiles C2 domain profile. 159 271 IPR000008 -
Sed14g1619 328 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 172 328 - -
Sed14g1619 328 Pfam C2 domain 174 262 IPR000008 -
Sed14g1619 328 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Sed14g1619 328 Gene3D C2 domain 152 328 IPR035892 -
Sed14g1619 328 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2119 Sed-Chr12:31868325 Sed14g1619 Sed-Chr14:24380671 1.20E-34 dispersed
Sed14g1275 Sed-Chr14:21768283 Sed14g1619 Sed-Chr14:24380671 7.80E-29 dispersed
Sed14g1276 Sed-Chr14:21768283 Sed14g1619 Sed-Chr14:24380671 7.80E-29 dispersed
Sed10g0063 Sed-Chr10:385591 Sed14g1619 Sed-Chr14:24380671 4.70E-168 wgd
Sed14g1619 Sed-Chr14:24380671 Sed08g2623 Sed-Chr8:38485567 1.10E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1619 K12486 - csv:101218116 580.482