Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed14g1646 ATGGGGAAGAAGAAGAAGAGGGTTGCGTCCAAGGTGTGGTGCTACTACTGCGACAGAGAATTCGACGACGAGAAGATTCTGGTTCAGCACCAGAAGGCCAAGCACTTCAAATGCCATGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGTATGGTCATCCACGTTCTTCAGGTCCATAAAGAGTCCGTCACCAAAGTTCCTAATGCCAAACCAGACAGAGAATCGACAGATATTGAAATATATGGAATGCAAGGAATTCCACCTGATGTCTTGGCAGCACACTATGGAGAGGATGAAGAAGAGTCCTTATCAAAGGTAGCCAAAGTGGAGATACCATTAACTCAAATGGCTGGTGGTATGGTGCCAGGATCGCTGGGTATTGTATACCCTCCTCGGCCAGGTTTAGCTGCAATGCGACCTATGTATGCTTCGACTGGACCAGCACAGCCTATGGCCTGGCAAGTTCCACCTCGTCCCCAACCTTGGTTTCCCCCAAATTCAGCCGTTTCAATCCCTCCTGTTCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGATTGCAAGACCCCCACTCCAAGTATCATCAACTTCTATGCTTCAGCCGTCACAAATAACCCCCCCTGGATTGCCTTCAACTACACCTTCAGTTTCTGTATCTCAACCGCTGTTCCCCGTTGTTAGTAATAGCCATGGACCTACCCAAAGCTCTCCGTTTCCTTCATCTATGCTTTCTACAAGCATTTCTTTGACGTCGGCTGCAGAAATCAAGGGCTCAGTGAGTGCACATTTGGGCACAAACTCCTTTTCAACTATTGGCAATCAAGTTCCAAGCATTCCAGGTGGAATATTAAACAATTCACACTCTTATGCCTCGGGACCAAATACAGGTGGTCCTTCTATTGGACCACCTCCTGTAATTGCAAATAAAGCTCCTACTCAACCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCAATGTCGATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACAAGCCAGATGAGTTCAATTGATGCGGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCGGGGCGAATGCCATTTTAG 1122 47.33 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPDRESTDIEIYGMQGIPPDVLAAHYGEDEEESLSKVAKVEIPLTQMAGGMVPGSLGIVYPPRPGLAAMRPMYASTGPAQPMAWQVPPRPQPWFPPNSAVSIPPVPLGYAQQPLFPVQIARPPLQVSSTSMLQPSQITPPGLPSTTPSVSVSQPLFPVVSNSHGPTQSSPFPSSMLSTSISLTSAAEIKGSVSAHLGTNSFSTIGNQVPSIPGGILNNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24617683 24622439 + Sed0004537.1 Sed14g1646 737364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed14g1646 373 Gene3D Classic Zinc Finger 2 66 - -
Sed14g1646 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
Sed14g1646 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Sed14g1646 373 SMART c2h2final6 12 35 IPR013087 -
Sed14g1646 373 SMART c2h2final6 36 59 IPR013087 -
Sed14g1646 373 CDD SUF4-like 11 92 - -
Sed14g1646 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Sed14g1646 373 MobiDBLite consensus disorder prediction 288 308 - -
Sed14g1646 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed14g1646 Sed-Chr14:24617683 Sed14g1647 Sed-Chr14:24617683 1.30E-198 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40673 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed14g1646 K27810 - csv:101206973 641.728