Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed14g1703 | ATGGGGCATTGCAGGGCGAACCCACATGGGCTTGGGCCGGTGATCCACTTAGTTTTGGCGGGAAAGTGCAGAAATTTGGGCGGCAAACAAGTTATAAGAGTTTACCTACCCTCATTTTGCGGTCTGAATCCCCAGAGTGGACATTCTCGAGCAATACACGACAAGGAAGAAGAAATGGAGAGCCATGGAGGTGGAAGCTACTTCGTGGACGAGAAGGCTGTTCTTGTGGAGAACCTTTTCTTCGACTTCCTCAAGAGTTTTCGCCTCACTGCCAACTCTGGAGACCCTTTCTACGAGGCTGAGATTGAAGCTATGATGGCCGGCGAATCCAACACTATGTTCATCGATTTCGCTCACCTTATGCGCTCCAATGATCTTCTTCACGTAGCAATCGCCGACGAATTTTTGAGGTTTGAACCGTACCTCAAGAACGCTTGCAAGCGATTCGTAATGGACCACAATCCTTCTTTCGTCGCTGACGATAACCCATTCAAGGACATTAACGTCGCTTTCTTCAACATTCCTGTTTCTAAGAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTGTCTGTGACAGGAGTGGTGACTCGGACGAGCGAGGTCCGACCGGAGCTTCTGCAGGGGACCTTCAAGTGCATAGAATGTGGAAATGTCATGAAGAATGTCGAACAACAATTTAAGTACACAGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACGAAGTGGGCATTACTCCGGCAAGAGAGTAAGTTTGCTGACTGGCAGAGGGTGCGGATGCAAGAGACGTCAAAGGAGATACCAGCTGGTTCTCTTCCACGATCTTTGGATGTTATTCTCCGCCATGAGATGGTCGAACGTGCTAGAGCTGGGGACACGATTATCTTCACTGGTACGGTAGTTGTTATACCAGATATATTAGCATTAACCTCTCCAGGAGAAAGGGCAGAATGTCGTCGAGAGGCTTCAGAGCGAAAAAACTCTATGGTTGGACATGGAGGAATGAGCGGGCTGCGAGCACTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCTGTTCAGATTCTAGATGGCAGAAGGGACTTTGATATCAGAAACAGGAAAAAGGATGTGGATGAAGATCAACAGTTTACTACTAGAGAGCTTGATGAAGTTCAAAGAATGAGGAGTACACCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGCTCATGCTGTTAGGTGGTGTCCACAAGTTAACTCATGAAGGCATTAATCTTCGAGGTGACATCAACGTCTGTATAGTAGGAGATCCAAGTTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCCAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGGTTGACTGCGACTGTAGCCAAAGAACCTGAAACTGGAGAGTTTTGTATCGAGGCTGGTGCCTTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCACGAAGCTATGGAGCAGCAGACAATAAGCATAACAAAAGCTGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTCGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGATCTTGTGTACGTGATGATAGACGACCCAGATGATCAAACAGATTACCACATTGCACACCACATTGTGAGAGTACATCAGAAGCACGAAGATGCACTTTCCCCTGCATTTACTACTGCTGAGTTGAAGCGATATATTACGTATGCGAAAACTCTCAAACCAAAGTTAAGTTTAGAAGCTCGAAAGGTATTGGTGGACTCTTATGTTGTTCTTCGCCGAGGAGATACAACTCCTGGAAGTAGGGTTGCCTATCGCATGACTGTTAGGCAGCTTGAGGCATTAATAAGGCTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACACTGGTTCAACCTCGCCATGTGCGGTTAGCAGTGACGTTGCTGAAAACGTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTTTCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGTTGATGATAATAATGTTGACAATAGGCCTGATGATGTTGGTGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTTTGGAAATGATGGTTCTGGAGGTCGACGTGAGAAGAAGAAACTTCTCCTGAGTGATGAATATTTTCAAAGGGTTACCCAAGCTCTTATCATGCGCCTCAGACAACATGAAGAATCTGTGATGCAAGAAGGAACTGGGCTGGCAGGAATGAGGCAGAGAGATTTGATCCATTGGTATGTGGCTCGGCAAAACGAGAGAAATAGCTATAGCTCCACGGAGGAGGCAGAAAAAGAAGTTAAGATTATTAGAAGTATTATCGAGAGTTTGATAGTGAGGGAAGGTCATTTGATAGTGGTAGATGACGCGAGACCGGTAGATGACAGGATTTTAGCTGTAGCTCCTAATTATGTCGTTGATTGA | 2637 | 45.35 | MGHCRANPHGLGPVIHLVLAGKCRNLGGKQVIRVYLPSFCGLNPQSGHSRAIHDKEEEMESHGGGSYFVDEKAVLVENLFFDFLKSFRLTANSGDPFYEAEIEAMMAGESNTMFIDFAHLMRSNDLLHVAIADEFLRFEPYLKNACKRFVMDHNPSFVADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCIECGNVMKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTIIFTGTVVVIPDILALTSPGERAECRREASERKNSMVGHGGMSGLRALGVRDLSYRLAFIANSVQILDGRRDFDIRNRKKDVDEDQQFTTRELDEVQRMRSTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYITYAKTLKPKLSLEARKVLVDSYVVLRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQPRHVRLAVTLLKTSIISVESSEIDLSEFQEETNGGGVDDNNVDNRPDDVGAEPRNGATEPTFGNDGSGGRREKKKLLLSDEYFQRVTQALIMRLRQHEESVMQEGTGLAGMRQRDLIHWYVARQNERNSYSSTEEAEKEVKIIRSIIESLIVREGHLIVVDDARPVDDRILAVAPNYVVD | 878 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 24882833 | 24890541 | + | Sed0009371.1 | Sed14g1703 | 737421 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed14g1703 | 878 | Gene3D | - | 769 | 878 | - | - | |
| Sed14g1703 | 878 | Pfam | MCM OB domain | 180 | 308 | IPR033762 | - | |
| Sed14g1703 | 878 | MobiDBLite | consensus disorder prediction | 726 | 769 | - | - | |
| Sed14g1703 | 878 | Gene3D | - | 180 | 308 | IPR012340 | - | |
| Sed14g1703 | 878 | Pfam | MCM N-terminal domain | 78 | 173 | IPR027925 | - | |
| Sed14g1703 | 878 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 74 | 822 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Sed14g1703 | 878 | ProSitePatterns | MCM family signature. | 512 | 520 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Sed14g1703 | 878 | FunFam | DNA helicase | 207 | 258 | - | - | |
| Sed14g1703 | 878 | Gene3D | - | 68 | 176 | - | - | |
| Sed14g1703 | 878 | Pfam | MCM P-loop domain | 391 | 613 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | Pfam | MCM AAA-lid domain | 628 | 713 | IPR041562 | - | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 504 | 518 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 532 | 545 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 459 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 556 | 568 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 583 | 591 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | FunFam | DNA helicase | 388 | 718 | - | - | |
| Sed14g1703 | 878 | Gene3D | - | 381 | 718 | IPR027417 | - | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 135 | 147 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 280 | 291 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 339 | 360 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 177 | 189 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed14g1703 | 878 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 227 | 244 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Sed14g1703 | 878 | CDD | MCM6 | 406 | 712 | - | - | |
| Sed14g1703 | 878 | SMART | mcm | 176 | 714 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed14g1703 | 878 | Pfam | MCM6 C-terminal winged-helix domain | 772 | 876 | IPR041024 | - | |
| Sed14g1703 | 878 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 413 | 714 | IPR027417 | - | |
| Sed14g1703 | 878 | Gene3D | - | 207 | 258 | - | - | |
| Sed14g1703 | 878 | SUPERFAMILY | Nucleic acid-binding proteins | 80 | 310 | IPR012340 | - | |
| Sed14g1703 | 878 | ProSiteProfiles | MCM family domain profile. | 403 | 609 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3910 | Sed-Chr4:47255122 | Sed14g1703 | Sed-Chr14:24882833 | 4.50E-98 | dispersed | |
| Sed11g0172 | Sed-Chr11:1521362 | Sed14g1703 | Sed-Chr14:24882833 | 4.20E-84 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed14g1703 | K02542 | - | csv:101219775 | 1438.71 |