Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0034 ATGGGTAGTGTTGTTGTATTAGTAAGCAAGCAAATTAAAGTGAAAGTGGAAAAGAATAGAATAAGAATGGGATCCAGTGGTTTAGAAGAGACACAGATGACCCCAACCCAAGTGAGCGATGAAGAAGAAGAAGAAGCACAGCTGTTCGCAATGCAGTTAGCAAGTGCCTCGGTTCTTCCGATGGTGCTGAAGGCCGCGATCGAGCTGGACGTGCTGGAGATCATTGCCGGGGCTGGGGAGGGTGCTTTGTTGTCCCCATACCAAATAGCTTCCCAGCTCTCAGGCTCCAAAAACCCTGAGGCGGATGTGGCTTTGGACAGAATCCTCCGCCTGCTGGCTAGCTACTCCATACTCACTTGCACCCTCAATAATACTCTCCCAGATGGCAACCTACAAAGGCTCTACGGCCTCGCCCCTGTCTCCAAGTTCTTGATCAAGAATCATGATGGCGTCTCCATTGCCCCACTCTGTCTCATGAATCAGGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCGGTACTTGAAGGAGGAATTCCATTCAACAGAGCATACGGAATGACGGCGTTCGATTACCATGGAACGGATCCGAGATTCAACAAGGTGTTCAACAGGGGAATGTCGGACCATTCTACCATTACAATGAAGAAGATTCTAGAAACCTACAAAGGGTTCGAAGGGCTTAATTCAGTGGTGGATGTGGGGGGTGGGACTGGAGCTGTTCTGAACATGATCGTTTCCAAGTACCCTTCTATTAGGGGAATCAACTTCGACCTCCCTCATGTGATTCAAGATGCCCCTGCCTACCCAGGCGTCCAACAGGTTGGGGGCGACATGTTTGTCAGCGTCCCAAAGGGAGATGCTATTTTCATGAAGGTATCTCTATTAATCAAAATTCCAATCAAATCCAAAACTAAACTAAACGCTTTTTCTTTACCTTTGCGCAGTGGATCTGCCACGATTGGAGCGACCAACACTGCCTCCAATTCTTGA 999 48.35 MGSVVVLVSKQIKVKVEKNRIRMGSSGLEETQMTPTQVSDEEEEEAQLFAMQLASASVLPMVLKAAIELDVLEIIAGAGEGALLSPYQIASQLSGSKNPEADVALDRILRLLASYSILTCTLNNTLPDGNLQRLYGLAPVSKFLIKNHDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNRAYGMTAFDYHGTDPRFNKVFNRGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPAYPGVQQVGGDMFVSVPKGDAIFMKVSLLIKIPIKSKTKLNAFSLPLRSGSATIGATNTASNS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 589373 593904 + Tan0022749.2 Tan01g0034 737458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0034 332 FunFam Os12g0199500 protein 146 277 - -
Tan01g0034 332 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 149 297 IPR029063 -
Tan01g0034 332 FunFam Caffeic acid 3-O-methyltransferase 25 144 - -
Tan01g0034 332 Gene3D Vaccinia Virus protein VP39 145 299 IPR029063 -
Tan01g0034 332 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 51 332 IPR016461 GO:0008168(InterPro)
Tan01g0034 332 SUPERFAMILY Winged helix DNA-binding domain 40 147 IPR036390 -
Tan01g0034 332 Gene3D - 28 144 IPR036388 -
Tan01g0034 332 Pfam O-methyltransferase domain 169 295 IPR001077 GO:0008171(InterPro)
Tan01g0034 332 PANTHER O-METHYLTRANSFERASE 45 297 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Tan01g0034 332 Pfam Dimerisation domain 61 113 IPR012967 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0034 Tan-Chr1:589373 Tan01g1865 Tan-Chr1:19864728 1.10E-77 dispersed
Tan01g0033 Tan-Chr1:589373 Tan01g0034 Tan-Chr1:589373 1.20E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0034 K13066 - csv:101204109 456.832