Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0051 ATGATCGCCACCGGCACCGACATCGCCCCCTCCTTCGGCGTCGGCGGCGGCTTCGTCTCCCGGATGATGGCGGGGGCGCGGCCGAATGCAGCCGTCGCGTTCACGGCCTTGGCGGGCCTCGCTGTGGTCGTCGTTCTCTTCTACTCTGCCAGTAGGGGACGCCTTAAATCGCCTTGGTCACGCAAGAAAAGAAAACACGCACTTTCACTGCAACAATGGAGGAGTTTGTTTACGCCAGATGGGAAACTTCGAGATGGCGGCATTAAGTTTTTAAAAAAAGTTCGCAGTGGAGGTGTAGATCCAAGTATTAGAGCAGAGGTCTGGCCGTTCCTTCTTGGAGTTTACAACTTGAGCAGTTGTGAAGAAGAAAGAGATGCCGTAAGAGTACAGAAGAGGAAAGAATATGAAAGACTTCGAAAACAATGCCGATCATTACTGAAGTCTGGGGATGAGAGTATGAAGTTGAATGATGATGATATGAACTGCAACAAGGAGAGGGACAATCAGCATGCTGCACATGGGGATGACTCTCCAATGAATTGCAACAAGGAGGGGGACAATCAGCATGTTGCTCATGGTGATGATGACTCTCCTAGTTTGGAAGATGTGGTTAGTGCTAGAGAATCTATTTCTAGTGATGAAAGGGGTTCGAACTTTAGGTACTTGGATGGAACCTCGGGGGTTTTGTTGGAAGAGGATGACAGTTCTAGAGGGTTGACAAATGCTGATGCTTCTGTTCTAAATACTGAATCATCTGACTCAGATTCGTCTGAGGATCCTGAAGTTAGTCAAACATTCCCTTCCTCTGATGGTAGAGAAGATAATGGTCCTGATTTCACTTCCAAAAACTCGTCTCCCTTGGTAACAGAGGTTACATCCAAATTTCGCAGTAATGAAGACTTTACAACATGGCAGCGGATCATCCGTCTTGATGCAGTACGTGCAAATGCAGAATGGATAGTGTACGCACCAACCCAAGCAGCGGTATCAGATGATAAGGCTAGACATTGTGCAGAGGTTGTTGGCTTGAAAGATTACGATCACCTAGAGTCCTGCAGGATCTTTCATGCTGCTAGGTTGGTCACCATTCTTGAAGCATACGCTCTTTATGACCCTGAAATTGGGTATTGCCAAGGAATGAGTGATCTGCTTTCTCCTATAATTACTGTGATAACTGAAGATCATGAGGCATTCTGGTGCTTTGTAGGCTTCATGCGGAAAGCTCGGCATAACTTTAGGCTTGATGAGGTTGGGATTCGAAAGCAGCTGAACATTGTATCTAGGATCATCAAATTCAAGGACTCCCACCTTTACAGACACCTGCAAGACCTCCAAGCGGAGGATTGCTTTTTCGTTTATAGGATGGTTGTGGTACTTTTTAGAAGGGAATTAACATTTGAACAGACGTTGTGCCTTTGGGAAGTCATGTGGGCCGATCAGGCAGCTATTAGAGCTGGTGTAGGTAAATCAGCTTGGAGCAGGATTAGGCAACGAGCCCCACCCACGGAGGATCTGCTGCTCTATGCAATTGCTGCCTCGGTATTACAGAAGAGGAAGTTGATTATAGAGAAATACAACAGTATGGACGAAATAATAAGGGAGTGTAACAGCATGGCCGGGCAACTTGATGTATGGAAACTATTGGACGATGCTCATGATTTGGTGGTGACCCTCCATGAGAAGATAGAAACCTCGTTTAATGAGTAA 1707 46.46 MIATGTDIAPSFGVGGGFVSRMMAGARPNAAVAFTALAGLAVVVVLFYSASRGRLKSPWSRKKRKHALSLQQWRSLFTPDGKLRDGGIKFLKKVRSGGVDPSIRAEVWPFLLGVYNLSSCEEERDAVRVQKRKEYERLRKQCRSLLKSGDESMKLNDDDMNCNKERDNQHAAHGDDSPMNCNKEGDNQHVAHGDDDSPSLEDVVSARESISSDERGSNFRYLDGTSGVLLEEDDSSRGLTNADASVLNTESSDSDSSEDPEVSQTFPSSDGREDNGPDFTSKNSSPLVTEVTSKFRSNEDFTTWQRIIRLDAVRANAEWIVYAPTQAAVSDDKARHCAEVVGLKDYDHLESCRIFHAARLVTILEAYALYDPEIGYCQGMSDLLSPIITVITEDHEAFWCFVGFMRKARHNFRLDEVGIRKQLNIVSRIIKFKDSHLYRHLQDLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGVGKSAWSRIRQRAPPTEDLLLYAIAASVLQKRKLIIEKYNSMDEIIRECNSMAGQLDVWKLLDDAHDLVVTLHEKIETSFNE 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 718947 723705 + Tan0008249.2 Tan01g0051 737475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0051 568 MobiDBLite consensus disorder prediction 150 202 - -
Tan01g0051 568 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 80 440 IPR035969 -
Tan01g0051 568 MobiDBLite consensus disorder prediction 204 218 - -
Tan01g0051 568 ProSiteProfiles TBC/rab GAP domain profile. 98 480 IPR000195 -
Tan01g0051 568 MobiDBLite consensus disorder prediction 232 287 - -
Tan01g0051 568 MobiDBLite consensus disorder prediction 239 271 - -
Tan01g0051 568 Gene3D - 416 563 - -
Tan01g0051 568 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 77 552 - GO:0005096(PANTHER)|GO:0090630(PANTHER)
Tan01g0051 568 SMART tbc_4 95 525 IPR000195 -
Tan01g0051 568 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 282 412 - -
Tan01g0051 568 MobiDBLite consensus disorder prediction 150 218 - -
Tan01g0051 568 Pfam Rab-GTPase-TBC domain 359 479 IPR000195 -
Tan01g0051 568 FunFam GTPase-activating protein gyp7 isoform X1 416 561 - -
Tan01g0051 568 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 417 554 IPR035969 -
Tan01g0051 568 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 282 412 - -
Tan01g0051 568 Coils Coil 128 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0051 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0051 Tan-Chr1:718947 Tan07g0523 Tan-Chr7:8909447 4.00E-205 dispersed
Tan01g0050 Tan-Chr1:718947 Tan01g0051 Tan-Chr1:718947 3.60E-286 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g943 . . . . . . . . . . . . . . Sed07g0879 . Cpe14g00008 Bhi01g01526 Tan01g0051 Cmetu06g1634 . . . . . . . . . . . Cone1ag1033 . . . . . . . . . . . . . . . . . . Cma16g00008 Cma18g01348 . . Cpe09g00004 . Bhi12g00772 . . Lac11g0080 Hepe06g0729 . Lcy12g0062 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001494 2 4 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 3 2 72