Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0077 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGCTCCACCATGTCTCTGCCTCCAAACCCACTAAAACAAATCAACTCACTGTCAGAAGAAAGAGCCGATGCTGCTCTGCTATAGCAATTGATGCTCCATCTTCTTTAACAGATGCTGCGGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGGGAAGAAATGGAGGACGAGGCTGTTGTGCGGTCTGATGGTCTTAATGGCTTCTTGTTTGCTGCAGTGTTTGATGGCCATGGTGGCTATTCCTCCGTCAAGTTCCTCGGGGAGGAGCTGTACAAAGGCTGCGTTGCAGCTTTAGAAGGTGGCTTGCTGTTGAATGGAGGGGATTTTGAAGTGATAAAAGGGGCTTTGGAGAAGGCTTTTGATGATACTGATAAAAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCAACTGCTGCATTCATACGAAATGATGTTATGTTCATTTCACATGTTGGTGACTCTTGTGTTGTCTTGTCACGTTCCGGAGGAGCACAGGTTTTGACTAGTTCTCATCGGCCATATGGAAACAACAGCACCTCACTGCAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATCGTCAACGGAAGAATCTGTGGAGACATCTCTGTATCTCGTGCATTTGGTGACATACGATTCAAGACAAAGAAATACGAGATGCTAAGAAAAGGAGTTGAAGAAGGGAGATGGTCTGAAAAATTTGTTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAAATTTTCAAGTTACTCTCGGGTCAAATGTCGAGTTTATACTGATAGCATCAGATGGCCTATGGGATTACATGAATAGCTCCGATGCGGTTAAATTTGTTCGGAATCAACTTAGACAGCACGGTGATGTTCAGCTAGCTTGTGAAGCCCTCGCGGAAGCAGCCTTGGATAAAGGGTCACAAGACAATATTAGCATTATCATGGCTGATTTGGGGCGGACAGATTGGCAGAATTTGCCCCATAAGCAAGACAATGTCATATTTGAACTGGCTCAAGCTTTTGCTACGATCGGGGTTGTTTCTTTCGGTATCTGGTGGGCGTCCTCTATTTTCTCTCTTTGA 1164 45.19 MALLSPRLHRFRLTKLHHVSASKPTKTNQLTVRRKSRCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDEAVVRSDGLNGFLFAAVFDGHGGYSSVKFLGEELYKGCVAALEGGLLLNGGDFEVIKGALEKAFDDTDKRLLLLLEAAGEEDESGSTATAAFIRNDVMFISHVGDSCVVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKYEMLRKGVEEGRWSEKFVSRVQFNGDLVTASPENFQVTLGSNVEFILIASDGLWDYMNSSDAVKFVRNQLRQHGDVQLACEALAEAALDKGSQDNISIIMADLGRTDWQNLPHKQDNVIFELAQAFATIGVVSFGIWWASSIFSL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 831839 838557 - Tan0021740.4 Tan01g0077 737501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0077 387 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Tan01g0077 387 CDD PP2Cc 56 345 IPR001932 -
Tan01g0077 387 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Tan01g0077 387 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Tan01g0077 387 PANTHER PROTEIN PHOSPHATASE 2C 55 344 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Tan01g0077 387 SMART PP2C_4 47 343 IPR001932 -
Tan01g0077 387 Gene3D - 56 352 IPR036457 -
Tan01g0077 387 FunFam Protein phosphatase 2C 57 56 352 - -
Tan01g0077 387 Pfam Protein phosphatase 2C 59 338 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0075 Tan-Chr1:831839 Tan01g0077 Tan-Chr1:831839 6.10E-221 dispersed
Tan01g0077 Tan-Chr1:831839 Tan11g1206 Tan-Chr11:9994268 1.90E-25 dispersed
Tan01g0076 Tan-Chr1:831839 Tan01g0077 Tan-Chr1:831839 6.10E-221 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0077 K04457 - csv:101218076 682.945