Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0095 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCCTCCAAGGAAGTTGCCACTTTAACAGTTTCTCGTTGTAGACACTGTATATCCAATTATATTCACGCTTCTAGCAAGCCCAATTCCCACTGCACGAACCGTAACAAATCGGACGACATCTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCGGTCTCACTCAGAGGCGACTTTGTCGACAACGGGAGTCCACCTTTCGATCATCGGAGGGTTTACCCAAATTCTAACAAGAACTTGAATGAGAAGTCGAGCTGGGGCGATTGTTTTATGAGCACTTATGGGGACCCACCTGAGGTGTGGTCTGGCGATGGGATTGTGATTCGTGGGAGCAATTCGAGCTTGAATGGTCGTGGAGGCGGCGGCGGCAGCGCCAACTCTGGTTCTGGTGGTGGGTTTGGCTCGAACTCAAATGATGGGTGTTGGGGTGGTTCCAGTTTGGGACCTAATTTTCCAACCCCGAAGGAAATCTCCAAGGGGCTTGATAAGTTTGTAATTGGTCAGGACAAAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCGCTTCAAAGGCCTACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGCAACATCCTTCTTATGGGGCCAACAGGCTCAGGGAAAACACTACTTGCCAAAACCTTGGCACGTTTTGTTAACGTTCCATTTGTTATTGCTGATGCAACTACCCTGACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATAGACGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAAGGCGTGCAGCAGGCTTTATTAAAAATGCTAGAAGGAACGATTGTAAATGTGCCTGAGAAGGGTGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACCAAGGATATTCTTTTCATATGTGGGGGTGCCTTCATTGACCTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGACAGGTGGTGTTACAGATGCCATTGTTACATCTTCTCTATTGGAGACGGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCCATCCTTGTCAGTTTGTCTGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATAACGTCAAGCTCCACTTCACAGAAAATGCCTTGAGATTAATTGCAAGAAAGGCAATGTCTAAGAACACTGGAGCACGGGGATTGCGATCAATATTGGAGAATCTATTGATGGATGCTATGTATGAGATTCCTGATGCCAGAACAGGTGAGGATATAATTGATGCTGTTATTGTTGATGAAGAATCCATTGGGTCAGACAGCTCCGGTTCTGGTGCTAAAATTCTTTATGGAAAGGGTGCATTGGATCGCTATCTTTCAGGACAAAAGGTAGAAGATAGAAAGGCAACAAGTCAGGGTTCTGAAAGAGAGCCAGAACCTGAAGGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCAGCATGTAA 1749 45.05 MAAAALRSRSSKEVATLTVSRCRHCISNYIHASSKPNSHCTNRNKSDDIYLNSPYHLVSFKPVSLRGDFVDNGSPPFDHRRVYPNSNKNLNEKSSWGDCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSANSGSGGGFGSNSNDGCWGGSSLGPNFPTPKEISKGLDKFVIGQDKAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRTGGVTDAIVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNNVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDAMYEIPDARTGEDIIDAVIVDEESIGSDSSGSGAKILYGKGALDRYLSGQKVEDRKATSQGSEREPEPEGETDLPSVVASSM 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 996751 1003482 + Tan0017886.2 Tan01g0095 737519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0095 582 MobiDBLite consensus disorder prediction 549 582 - -
Tan01g0095 582 MobiDBLite consensus disorder prediction 122 142 - -
Tan01g0095 582 Gene3D - 156 433 IPR027417 -
Tan01g0095 582 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 20 551 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Tan01g0095 582 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 160 525 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Tan01g0095 582 SMART ClpB_D2_small_2 435 525 IPR019489 -
Tan01g0095 582 MobiDBLite consensus disorder prediction 549 571 - -
Tan01g0095 582 Gene3D - 434 535 - -
Tan01g0095 582 Pfam C-terminal, D2-small domain, of ClpB protein 435 505 IPR019489 -
Tan01g0095 582 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 434 535 - -
Tan01g0095 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 521 IPR027417 -
Tan01g0095 582 SMART AAA_5 224 420 IPR003593 GO:0016887(InterPro)
Tan01g0095 582 CDD RecA-like_ClpX 162 432 - -
Tan01g0095 582 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 155 433 - -
Tan01g0095 582 Pfam AAA domain (Cdc48 subfamily) 224 428 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0095 K03544 - - csv:101215939 975.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0095 Tan-Chr1:996751 Tan10g1825 Tan-Chr10:57010878 4.00E-184 dispersed
Tan01g0094 Tan-Chr1:996751 Tan01g0095 Tan-Chr1:996751 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75