Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g0096 | ATGGATTTGGATAGTATTGAGTGTGTATCGTCTTCAGATGGTCTCGATGAGGATGAGATCCACCTGCATCACACTCTTCATCCTTATTCCCATTCTCATCTTCATCCAGAGTTGTCAGCAACGAAGCCTCGTAATGGAACCATCAATAGTGCTATAACAGGCCATACTGCCACTGCACCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAACCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCGGAGTCACTGGAATTGCCTTGCAAGTATTATTCCTTGGGATGCCCAGAAATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGGTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCTGTCTATATGGCTTTCCTACGTTTCATGGGTGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTGGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAGGTGAGGGACAGCCACGATGGACTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCCGATGCCGGGGTCTGCATACCGAACCTGTGTAGCTAA | 996 | 46.89 | MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHLHPELSATKPRNGTINSAITGHTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1004837 | 1007846 | + | Tan0009245.1 | Tan01g0096 | 737520 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g0096 | 331 | CDD | RING-HC_SIAHs | 68 | 106 | - | - | |
Tan01g0096 | 331 | CDD | Sina | 184 | 312 | - | - | |
Tan01g0096 | 331 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 177 | 311 | IPR008974 | GO:0005515(InterPro) | |
Tan01g0096 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 176 | IPR013083 | - | |
Tan01g0096 | 331 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 122 | 178 | - | - | |
Tan01g0096 | 331 | Pfam | Sina, zinc finger | 119 | 194 | - | - | |
Tan01g0096 | 331 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 70 | 105 | IPR049548 | - | |
Tan01g0096 | 331 | Pfam | Sina, TRAF-like domain | 214 | 311 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Tan01g0096 | 331 | ProSiteProfiles | Zinc finger SIAH-type profile. | 123 | 183 | IPR013010 | GO:0008270(InterPro) | |
Tan01g0096 | 331 | ProSiteProfiles | Zinc finger RING-type profile. | 70 | 106 | IPR001841 | - | |
Tan01g0096 | 331 | SUPERFAMILY | TRAF domain-like | 123 | 315 | - | - | |
Tan01g0096 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 122 | IPR013083 | - | |
Tan01g0096 | 331 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 179 | 311 | - | - | |
Tan01g0096 | 331 | SUPERFAMILY | RING/U-box | 59 | 110 | - | - | |
Tan01g0096 | 331 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 121 | - | - | |
Tan01g0096 | 331 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 49 | 313 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0096 | Tan-Chr1:1004837 | Tan01g0099 | Tan-Chr1:1008354 | 1.70E-195 | dispersed | |
Tan01g0096 | Tan-Chr1:1004837 | Tan01g0097 | Tan-Chr1:1008354 | 1.70E-195 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g0096 | K04506 | - | csv:101215696 | 685.256 |