Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g0098 | ATGTTGCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCCCTGGGATGTCCTGAGATATTTCCGTACTATAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGTTCAGAATGCTCTGCTATTGGGGATATTCCTTTTCTTGTTGCCCATCTGAGGGACGATCACAAGGTGGATATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTCACTGTTTTTCATTGTTTCGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTGTTAGAGACAGTCATCGAAAAGTCAGGGACAGCCATGATGGGTTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGAAAGGAACTGAAGCTGAGAGTTACGGGAAGAATATGGAAGGAACAAAACCCAGATGCCGGCGTCTGCATACCGAATCTTTGTAGCTAA | 756 | 45.24 | MLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAIGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1008354 | 1011783 | + | Tan0017454.2 | Tan01g0098 | 737522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g0098 | 251 | CDD | Sina | 104 | 232 | - | - | |
Tan01g0098 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 96 | IPR013083 | - | |
Tan01g0098 | 251 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 2 | 233 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Tan01g0098 | 251 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 99 | 231 | - | - | |
Tan01g0098 | 251 | SUPERFAMILY | TRAF domain-like | 43 | 235 | - | - | |
Tan01g0098 | 251 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 97 | 231 | IPR008974 | GO:0005515(InterPro) | |
Tan01g0098 | 251 | ProSiteProfiles | Zinc finger SIAH-type profile. | 43 | 103 | IPR013010 | GO:0008270(InterPro) | |
Tan01g0098 | 251 | Pfam | Sina, zinc finger | 39 | 114 | - | - | |
Tan01g0098 | 251 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 40 | 98 | - | - | |
Tan01g0098 | 251 | Pfam | Sina, TRAF-like domain | 134 | 231 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0098 | Tan-Chr1:1008354 | Tan01g0100 | Tan-Chr1:1008354 | 4.90E-155 | dispersed | |
Tan01g0097 | Tan-Chr1:1008354 | Tan01g0098 | Tan-Chr1:1008354 | 9.40E-154 | tandem | |
Tan01g0098 | Tan-Chr1:1008354 | Tan01g0099 | Tan-Chr1:1008354 | 5.40E-154 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g0098 | K04506 | - | csv:101215696 | 534.258 |