Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0098 ATGTTGCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCCCTGGGATGTCCTGAGATATTTCCGTACTATAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGTTCAGAATGCTCTGCTATTGGGGATATTCCTTTTCTTGTTGCCCATCTGAGGGACGATCACAAGGTGGATATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTCACTGTTTTTCATTGTTTCGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTGTTAGAGACAGTCATCGAAAAGTCAGGGACAGCCATGATGGGTTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGAAAGGAACTGAAGCTGAGAGTTACGGGAAGAATATGGAAGGAACAAAACCCAGATGCCGGCGTCTGCATACCGAATCTTTGTAGCTAA 756 45.24 MLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAIGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1008354 1011783 + Tan0017454.2 Tan01g0098 737522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0098 251 CDD Sina 104 232 - -
Tan01g0098 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 96 IPR013083 -
Tan01g0098 251 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 233 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan01g0098 251 FunFam E3 ubiquitin-protein ligase SINAT5-like 99 231 - -
Tan01g0098 251 SUPERFAMILY TRAF domain-like 43 235 - -
Tan01g0098 251 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 97 231 IPR008974 GO:0005515(InterPro)
Tan01g0098 251 ProSiteProfiles Zinc finger SIAH-type profile. 43 103 IPR013010 GO:0008270(InterPro)
Tan01g0098 251 Pfam Sina, zinc finger 39 114 - -
Tan01g0098 251 FunFam E3 ubiquitin-protein ligase SINAT3 40 98 - -
Tan01g0098 251 Pfam Sina, TRAF-like domain 134 231 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0098 Tan-Chr1:1008354 Tan01g0100 Tan-Chr1:1008354 4.90E-155 dispersed
Tan01g0097 Tan-Chr1:1008354 Tan01g0098 Tan-Chr1:1008354 9.40E-154 tandem
Tan01g0098 Tan-Chr1:1008354 Tan01g0099 Tan-Chr1:1008354 5.40E-154 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0098 K04506 - csv:101215696 534.258