Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0099 ATGGATTTGGATAGTATCGAGTGTGTATCATCATCAGACGGTCTCGATGAGGATGAGATCCATTTGCACCACACTCTTCATCCTTATTCCCATTCTCATCATCACCCCGAGTTGTCAGCATCAAAGCCTCGTAATGGAAACAACAATACCGCTGTTGTGAACGGCTCCACTGCAACTGCGCCGGCAACTAGCGTTCATGAATTGCTCGAGTGCCCTGTCTGCACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCCCTGGGATGTCCTGAGATATTTCCGTACTATAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGTTCAGAATGCTCTGCTATTGGGGATATTCCTTTTCTTGTTGCCCATCTGAGGGACGATCACAAGGTGGATATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTCACTGTTTTTCATTGTTTCGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTGTTAGAGACAGTCATCGAAAAGTCAGGGACAGCCATGATGGGTTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGATAGAAAGGAACTGAAGCTGAGAGTTACGGGAAGAATATGGAAGGAACAAAACCCAGATGCCGGCGTCTGCATACCGAATCTTTGTAGCTAA 999 45.95 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSASKPRNGNNNTAVVNGSTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSAIGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1008354 1011783 + Tan0017454.3 Tan01g0099 737523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0099 332 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 44 314 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Tan01g0099 332 MobiDBLite consensus disorder prediction 28 55 - -
Tan01g0099 332 FunFam E3 ubiquitin-protein ligase SINAT3 11 122 - -
Tan01g0099 332 SUPERFAMILY TRAF domain-like 124 316 - -
Tan01g0099 332 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270(InterPro)
Tan01g0099 332 FunFam E3 ubiquitin-protein ligase SINAT5-like 180 312 - -
Tan01g0099 332 Pfam Sina, zinc finger 120 195 - -
Tan01g0099 332 CDD Sina 185 313 - -
Tan01g0099 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 177 IPR013083 -
Tan01g0099 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 123 IPR013083 -
Tan01g0099 332 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 71 106 IPR049548 -
Tan01g0099 332 Pfam Sina, TRAF-like domain 215 312 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Tan01g0099 332 MobiDBLite consensus disorder prediction 41 55 - -
Tan01g0099 332 SUPERFAMILY RING/U-box 59 111 - -
Tan01g0099 332 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 312 IPR008974 GO:0005515(InterPro)
Tan01g0099 332 CDD RING-HC_SIAHs 69 107 - -
Tan01g0099 332 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
Tan01g0099 332 FunFam E3 ubiquitin-protein ligase SINAT3 123 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0096 Tan-Chr1:1004837 Tan01g0099 Tan-Chr1:1008354 1.70E-195 dispersed
Tan01g0097 Tan-Chr1:1008354 Tan01g0099 Tan-Chr1:1008354 1.20E-201 dispersed
Tan01g0099 Tan-Chr1:1008354 Tan06g1742 Tan-Chr6:34756841 5.20E-144 dispersed
Tan01g0098 Tan-Chr1:1008354 Tan01g0099 Tan-Chr1:1008354 5.40E-154 tandem
Tan01g0099 Tan-Chr1:1008354 Tan01g0100 Tan-Chr1:1008354 9.40E-154 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0099 K04506 - csv:105434867 673.7