Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0107 ATGGGTTATGGCCGCCTCAACGAAACCGACCCTGGTGGCTCCTCCGGCGCTGTAACTTTCCAGCTCTCCGACGACGCCGTTTCATTCCCCACTCCCTCTCCCAACCGAAGAAGGAGAACACGACTTCTCCTTCTCTCCCTTCTCTCCCTCATTCTCATCATCGCCGCCGCTGTCTCCGCCACTTTCCTCGTCGGACTCCGAACCGCCTCTTCCTCTCCCCGATCCGACCCGAATCTCCCTCGAAAACCCACTCAGGCCATTTCCAAGGCCTGTAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTACTCGATTTCCCTGGATCTCTCAACGCCAACGAACACGATCTCGTCCACATTTCCTTCAATTTAACTCTCCAGCATCTCAACAAAGCCCTCTATCTCTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGCGTTCGCTCTGCCTATGACGCTTGTCTTGAACTCCTCGACGACTCTGTCGACGCTCTCACACGCTCCTTACAGTCCGTCGCGCCACCTTCCTCTGACGGCACCCCCCATCGCCTCGCCTCCTCCGATGACATCATCACCTGGCTCAGCGCCGCCCTCACCAACCAAGACACCTGTTCCGACGGATTCTCCGAACTTACTGGAAATGTTAAAGATCAAATGACGGATAAACTCCACAATTTATCCGAGCTTGTGAGCAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAACGATTTCGCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGGACGCCGGGGAGAACGTGGTTAGTTCCGGTAACTTCCCCGGCTGGATGAGCCGGAGAGAGAGGCGGTTACTGACGCTGCCGGTGGGGGCGCTACAGGCCGATATTGTGGTTTCTAAGGACGGGAACGGAACGGTGAAGACGATTGCCGAAGCGATCAAAAAGGCTCCGGAATACAGTAGCAAAAGGACGATCATCTATGTGATGGCAGGAAGGTACGAAGAGAAGAATCTGAAGGTGGGAAGGAAGAAAACGAACCTGATGTTTGTTGGGGATGGAAAGGGTAAAACAGTCATTTCGGGTGCTAAGAGTATCTTTGACAACGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGTGCCGGTATAATATTGAGGGACATGACATTTGAGAATTGGGCCGGACCGGGTCGACACCAGGCGGTGGCGCTCCGAGTCGGCGCCGACCACGCCGTCGTGTACCGCTGCAACGTAATCGGCTATCAAGACACTCTGTACGTCCATTCCAACCGCCAATTCTTTAGAGAGTGCGACATTTACGGGACCGTCGATTTCATCTTTGGCAATGCGGCGGTGGTGTTTCAGAACTGCAGCATTTACGCCCGAAAAGCGATGGACCTTCAAAAGAACACAATCACAGCCCAGAATCGGAAGGATCCGAATCAGAATACCGGAATTTCCATCCACGCCTGCCGGATTTTAGCCACCTCCGATCTGTCGTCGTCCAATAGCAGCAACCCGACGTATCTGGGCCGGCCGTGGAAATTATACTCTAGAGTCGTGTACATGCTATCGTACATAGGGAGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAATGCCACGTTTGCACTTGACACGTTGTATTACGGTGAGTATATGAATTATGGGCCGGGTGGGGCAGTGGGCCAGAGGGTGACGTGGCCTGGGTATCGGGTCATAACGTCCCCGGTGGAGGCGAGTAAGTTTACGGTGGCGCAGTTCATTTACGGCTCGTCGTGGTTGCCGTCCACTGGAGTTGCATTTCTTGGAGGGTTAAATGTGTAA 1824 54.22 MGYGRLNETDPGGSSGAVTFQLSDDAVSFPTPSPNRRRRTRLLLLSLLSLILIIAAAVSATFLVGLRTASSSPRSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEHDLVHISFNLTLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPPSSDGTPHRLASSDDIITWLSAALTNQDTCSDGFSELTGNVKDQMTDKLHNLSELVSNCLALFSGSETNDFAGVPIQNKRRLMDAGENVVSSGNFPGWMSRRERRLLTLPVGALQADIVVSKDGNGTVKTIAEAIKKAPEYSSKRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSIFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTITAQNRKDPNQNTGISIHACRILATSDLSSSNSSNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSPVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1054518 1057902 - Tan0016494.1 Tan01g0107 737531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0107 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 240 IPR035513 -
Tan01g0107 607 PANTHER PECTINESTERASE 46 596 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan01g0107 607 FunFam Pectinesterase 83 242 - -
Tan01g0107 607 SMART PMEI_2 82 238 IPR006501 GO:0004857(InterPro)
Tan01g0107 607 Pfam Pectinesterase 293 590 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan01g0107 607 ProSitePatterns Pectinesterase signature 2. 438 447 IPR033131 -
Tan01g0107 607 FunFam Pectinesterase 287 605 - -
Tan01g0107 607 Gene3D - 287 605 IPR012334 -
Tan01g0107 607 NCBIfam pectinesterase inhibitor domain 62 239 IPR006501 GO:0004857(InterPro)
Tan01g0107 607 SUPERFAMILY Pectin lyase-like 289 603 IPR011050 -
Tan01g0107 607 CDD PMEI-like_3 90 240 - -
Tan01g0107 607 Pfam Plant invertase/pectin methylesterase inhibitor 86 238 IPR006501 GO:0004857(InterPro)
Tan01g0107 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 241 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0107 Tan-Chr1:1054518 Tan06g0779 Tan-Chr6:6141224 4.30E-136 dispersed
Tan01g0107 Tan-Chr1:1054518 Tan07g0472 Tan-Chr7:8595177 1.60E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0107 - - - 0.0