Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0112 ATGATAATCAAACGCAATCTGAAATCCCAAATGCCGAATCTGAAACGGTGCAAACTCGGCGACTCGGTTGGTGAAGACGACGAGAGCTCGGCGGCGAGGAAGAAGAGAAAGCTAAACGGTTATTACCCACTTAATCTTCTCGGCGAGGTTGCGGCTGGAATAATCCCTCTAAAGCTTCACGACATTCTCGGCACCAACAACAAGGGGATTACGGCATCGTGGTGTACCCAGATATCTTGTTCCGCCATGGAAATGGAGTCGAAGTCGAATAGCCGAGAATCATTAGCAAGAGAAGCTACGAAACGGCCGGCCGAGGTCCCACGACCCCCCCTTGTGAGGACTTCGAGAGGACGGGTTCAGGTACTTCCTTCTCGGTTTAACGATTCTGTTATTGAGAATTGGAAGAAAGACGGCAAGACTAGCTTGCGCGATTACAGTTTCGATGAGGAATTCAAATGTAAGAAGGAGAAATTCAGTTTCAAGACTCCTAGAATTTGTAATGGGACTGCCAAGAAAGTACAGAACGGTGAGAAATTGGGTTTCAAGTTCGTCAAATGTCCGGCATTGTGTGAAGAAGAGGAAGATGAACCGGGGGGTATGGAGTTCAAGAATTTCGATTTCAGGAAGAATTCGAGCTCTCGTAGTTCACTAACTTCCGTACACGAGACTGTTGTTGAAGATGAGAAGTTCCCAGTTGATGTAGTTGGTGAAGATGGGAGTCCAAAGGAGACTAAACCGAAGGATGGTTTATATGGACCTGAAGATTTCTATTCAGGTGATATTGTATGGGCAAAGGCAGGGAGGAAAGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATAACTCAGGCGCCTGAACTAGTTTTGAGAGCTTGTGTTGCAGATGCAGCTTGCATTATGTTCTTTGGATATTCTGGGAACGAAAATCAAAGGGATTATGCATGGGTGAGGCGGGGTATGATCTTTCCATTTATGGATTTTGTAGACAGGTTCCAAGGACAGCCGGAGTTGGATACATGCAAACCCAACGAGTTCCAGATTGCAATAGAGGAAGCATTTTTGGCAGAACGTGGGTTTACAGAGAAATTGATTGCAGATATTAATATGGCAGCTGGAAATACGATTGCTGATGAATTTCTTTTTCGAGGGACTCAGGAAGCTACTGGTTCTAACCAGGATCCTGATTGCCATTCTCCTCCCAAGCGGACTAGCTGCATTAAGGAAATGTATGCAAAGAAAGATGGACGGCATTGTGAAGGCTGTGGCCAAACACTTCCTATAAAATTGGTGAAGAAAATGAAGGCTTCACCTCCTGGAAGTCAGTTTTTATGTAAATCATGCACAAGGTTAACGAATTCAAAACATTATTGCGGCATATGCAAAAAGATTTGGAATCATTCAGATAGTGGTAGTTGGGTTCGTTGTGATGGTTGTAAAGTATGGGTGCATGCAGCATGTGACAAAATTTCAAGCAATCTGTTCAAGGATCTGGGAAGTACTGATTATTTCTGCCCTACATGCAAAGCAAAATTCGATTTTGAACTATCAGATTCAGAAAAATCACGACCCAAAGTCAAAGTGAACTCAAATAATGAACGAATGGTTCGTTCTAACAAAGTTACTGTGCTCTGCAATGGTGTGGAAGGCATTTATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTCTTGTGGGACAGAAAAACAAGCACTTAGTGAGTGGGAACGGCATACTGGATCCAAGTCAAGGAATTGGAAGACCAGTGTGAGGGTAAAAGGTTCCATGCTGCCCCTAGAACAATGGATGCTGCAATTAGCTGAGTTCCATGCTACTGCTGCTTCTGTCAAGCATCCCAAACGGCCTTCCATGAAAGAACGAAGGCAGAAGTTGCTCGCTTTTTTGCAGGAGAAATATGAACCTGTTTATGCAAAGTGGACGACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGACTACAATAAGATTATTATCTGCAACAGATGTCAGATAGCAGTTCATCAAGAATGCTATGGAGCTAGAAATGTTCGGGATTTAACATCTTGGGTCTGTAAAGTGTGTGAAACTCCTGATGTTAAGCGGGAATGTTGTCTCTGTCCAGTAAAAGGGGGTGCCTTGAAACCCACTGATGTGGATACATTATGGGTTCATGTTACCTGTGCTTGGTTTAGGCCCGAAGTCTCTTTTGCAAGTGATGAGAAAATGGAGCCTGCTCTTGGTATCTTGAGTATCCCTTCAAATTCTTTTGTAAAGATTTGTGTAATCTGTAAGCAAATTCACGGTTCATGCATGCAATGCTGCAAGTGCTCTACTTACTACCATGCTATGTGTGCATCAAGAGCAGGCTATTGCATGGAGTTGCATTGCCTGGAGAAGAATGGTAGACAAATCACAAAAATGGTATCTTATTGCGCTTATCATAGGGCTCCCAATCCGGATACCGTTCTTATTATACAGACTCCTCTTGGGGTTTTTTCTACTAAAAGCCTTCTTCAGAATAAGAAGAGAGCTGGTTCAAGGTTAATTTCATCTAGCAGAAAGGAAATAGAAGAAATATCTGAAACTTCTGAACTTGAGCCATTTTCTGCTGCAAGGTGTCAGGTTTATAAAAGATCTACTAGTGTGAAGAAGAGAACGGTTGAGGAAACGGTTATACACAAAGTGATGGGGCCATGCCATCATCCTGTACAAGCATTACAAAGTCTTAATACATTCAGCTTACCAATGGTAGAGGAACCAAAGATCTTTTCCTCATTTCGAGATCGATTGCACCACTTACAGAGAACGGAGAACGACCGGGTATGCTTCGGTAGATCTGGTATACATGGATGGGGGCTTTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGGCGCACGGTTGCTGATCTAAGGGAGGCGCGGTACAGATTGGCGGGCAAAGACTGCTATCTCTTTAAGATCAGCGAAGAAGTAGTTGTCGATGCCACCGACAAAGGAAATATAGCGCGCTTGATCAACCATTCATGTATGCCCAACTGCTATGCAAGGATCATGAGTGTGGGCGATGATGAAAGTCGGATTGTTCTCATTGCCAAGGCTAACGTCCCTGCTGGCGAAGAGCTAACGTACGATTATTTGTTCGATCCGGATGAACCCGATGAATTCAAAGTCCCCTGTCTATGTAAAGCTCCAAACTGTCGGAAGTTCATGAATTAG 3252 43.67 MIIKRNLKSQMPNLKRCKLGDSVGEDDESSAARKKRKLNGYYPLNLLGEVAAGIIPLKLHDILGTNNKGITASWCTQISCSAMEMESKSNSRESLAREATKRPAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWKKDGKTSLRDYSFDEEFKCKKEKFSFKTPRICNGTAKKVQNGEKLGFKFVKCPALCEEEEDEPGGMEFKNFDFRKNSSSRSSLTSVHETVVEDEKFPVDVVGEDGSPKETKPKDGLYGPEDFYSGDIVWAKAGRKEPFWPAIVIDPITQAPELVLRACVADAACIMFFGYSGNENQRDYAWVRRGMIFPFMDFVDRFQGQPELDTCKPNEFQIAIEEAFLAERGFTEKLIADINMAAGNTIADEFLFRGTQEATGSNQDPDCHSPPKRTSCIKEMYAKKDGRHCEGCGQTLPIKLVKKMKASPPGSQFLCKSCTRLTNSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAACDKISSNLFKDLGSTDYFCPTCKAKFDFELSDSEKSRPKVKVNSNNERMVRSNKVTVLCNGVEGIYFPSLHLVVCKCGSCGTEKQALSEWERHTGSKSRNWKTSVRVKGSMLPLEQWMLQLAEFHATAASVKHPKRPSMKERRQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDLTSWVCKVCETPDVKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCMQCCKCSTYYHAMCASRAGYCMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLLQNKKRAGSRLISSSRKEIEEISETSELEPFSAARCQVYKRSTSVKKRTVEETVIHKVMGPCHHPVQALQSLNTFSLPMVEEPKIFSSFRDRLHHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTVADLREARYRLAGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKANVPAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1103649 1114981 + Tan0000237.1 Tan01g0112 737536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0112 1083 CDD PWWP_AtATX3-like 257 361 - -
Tan01g0112 1083 SMART PostSET_3 1067 1083 IPR003616 -
Tan01g0112 1083 Gene3D SET domain 853 1083 IPR046341 -
Tan01g0112 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 700 IPR013083 -
Tan01g0112 1083 Pfam PHD-zinc-finger like domain 704 816 - -
Tan01g0112 1083 SUPERFAMILY FYVE/PHD zinc finger 649 713 IPR011011 -
Tan01g0112 1083 SMART set_7 941 1064 IPR001214 GO:0005515(InterPro)
Tan01g0112 1083 FunFam Histone-lysine N-methyltransferase 638 699 - -
Tan01g0112 1083 ProSiteProfiles Zinc finger PHD-type profile. 454 510 IPR019787 -
Tan01g0112 1083 Pfam PWWP domain 259 353 IPR000313 -
Tan01g0112 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 511 IPR013083 -
Tan01g0112 1083 SUPERFAMILY SET domain 934 1080 IPR046341 -
Tan01g0112 1083 SMART PHD_3 456 508 IPR001965 -
Tan01g0112 1083 SMART PHD_3 761 817 IPR001965 -
Tan01g0112 1083 SMART PHD_3 650 697 IPR001965 -
Tan01g0112 1083 SUPERFAMILY FYVE/PHD zinc finger 452 511 IPR011011 -
Tan01g0112 1083 ProSiteProfiles PWWP domain profile. 258 327 IPR000313 -
Tan01g0112 1083 SUPERFAMILY Tudor/PWWP/MBT 251 357 - -
Tan01g0112 1083 CDD PHD_TCF19_like 457 507 - -
Tan01g0112 1083 CDD SET_SETD1-like 928 1079 - -
Tan01g0112 1083 ProSitePatterns Zinc finger PHD-type signature. 651 696 IPR019786 -
Tan01g0112 1083 Gene3D - 253 359 - -
Tan01g0112 1083 ProSiteProfiles SET domain profile. 941 1058 IPR001214 GO:0005515(InterPro)
Tan01g0112 1083 Pfam PHD-finger 457 507 IPR019787 -
Tan01g0112 1083 CDD ePHD_ATX3_4_5_like 705 816 IPR041955 -
Tan01g0112 1083 Pfam PHD-finger 663 697 IPR019787 -
Tan01g0112 1083 ProSiteProfiles Extended PHD (ePHD) domain profile. 702 817 IPR034732 -
Tan01g0112 1083 FunFam Histone-lysine N-methyltransferase 916 1083 - -
Tan01g0112 1083 Gene3D - 530 613 IPR010919 -
Tan01g0112 1083 PANTHER PHD FINGER PROTEINS 101 1083 IPR050701 GO:0006357(PANTHER)
Tan01g0112 1083 MobiDBLite consensus disorder prediction 90 104 - -
Tan01g0112 1083 MobiDBLite consensus disorder prediction 89 110 - -
Tan01g0112 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 819 IPR013083 -
Tan01g0112 1083 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1083 IPR025780 -
Tan01g0112 1083 Pfam SET domain 952 1057 IPR001214 GO:0005515(InterPro)
Tan01g0112 1083 ProSiteProfiles Post-SET domain profile. 1067 1083 IPR003616 -
Tan01g0112 1083 CDD PHD_ATX3_4_5_like 650 696 IPR042011 -
Tan01g0112 1083 ProSiteProfiles Zinc finger PHD-type profile. 648 699 IPR019787 -
Tan01g0112 1083 FunFam Histone-lysine N-methyltransferase 700 819 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0112 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0112 Tan-Chr1:1103649 Tan06g1734 Tan-Chr6:33971040 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26247 PF13832 zf-HC5HC2H_2 8.00E-27 CL0390 Tan TR