Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0115 ATGTCGTCTACGCTGCTTGAGGTGACCCGCTCTTCGCACGAGGAGGTGGAGCGGCTCGAGCGGCTTATAGTGAAGGAACTCCAAAATGAACCTGCATCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATCGATACCATCATGTCCACCACCGACAAACTCGTTGAGATTTATGAAGACAAGGATAATGCCAGAAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGAGGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCATGAAATCTACAACCAATATATTAATTCGAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTTTCACAACCCCAGAAAGTCTCTCGCAAACTAAAGATTTCAAGACAGTACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTACAAGATCTTGATCGAATATTCTCAAAGGTCGAAACTGAATTCGAAGAGCGATGGATCACTGGTACAATTGAAGGATGGGAGAACACTGGTGAAGATAATGGCCATGATCCTGCCCAGCATAGTCTTATTGATCTTGACTATTATAGCACAATGGAAGAGCTGGTGGAACTAGGTCCGGAAAGGTTGAAGGAGGGGTTGGCAGGATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAACTGTTGGACAAAAAACACTTTGCAAAATTGTCCCGGCAACCGGTTCAGAATGGGGCAGCTGCAGCTTCACTACACAATGAAAATTTGAAACAAGTTGCCCTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACGATCGCCCGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATACGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAAATTTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCATACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTTAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAACAAATGGCGACCAGATCTAGAAGAAGAGTACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACCTATACAGATCTGCAACGCCAGGGGTTGATATAA 1527 43.94 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLKEEPQIEFSGEEAFGRYLDLHEIYNQYINSKFGEAIEYSSYLDVFSQPQKVSRKLKISRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVETEFEERWITGTIEGWENTGEDNGHDPAQHSLIDLDYYSTMEELVELGPERLKEGLAGLGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQPVQNGAAAASLHNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1124732 1141268 - Tan0003730.1 Tan01g0115 737539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0115 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 481 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
Tan01g0115 508 Pfam Replication stress response SDE2 C-terminal 223 303 IPR025086 -
Tan01g0115 508 Coils Coil 352 379 - -
Tan01g0115 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Tan01g0115 508 MobiDBLite consensus disorder prediction 362 381 - -
Tan01g0115 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Tan01g0115 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 173 IPR031774 -
Tan01g0115 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0115 Tan-Chr1:1124732 Tan11g2245 Tan-Chr11:62952836 2.40E-07 dispersed
Tan01g0115 Tan-Chr1:1124732 Tan01g0116 Tan-Chr1:1124732 1.30E-287 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0115 K12827 - csv:101205916 946.421