Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0124 ATGCATTTACAGAACAAGTGTACTAGCCGGAACTTCCTCCGACGGCCGGTCGCCGTAATGTGTGATCTCACCGGTATGATTAAGACGAAGAATGTTCGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGAAAGTACACGCGGCGGAAGCTGAGGGAAACGAATTAGGCGAAAATGGAGCTTCGGAATCGAATGGTGATCGAGTTCTACTCTCTGAGAAGGAATCGATTTCGGTGTTTGATTGTGGATTGTACAGTGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAACTGGGATTGACGACGGCGATAAATGATGCGACGTACGATTTCTTCGCCGTGTACGACGGACACGGAGGCGCACAGGTGGCGCAGGTTTGCCGTGAGCGGTTGCACAGGATTGTGGCGGAGGAGATTGTGGATCGGGGAGAGATGGATGAGGCGGAGTGGGGGAAGTTGATGGAGAGGTGCTTTGAGAGAATGGACAATGAGGTGAACAGCGGCGCCGCCGCGATGAAGACGGTCGGCTCGGCGGTGGTGGCGGTGGTTATCGGAAAGGAGGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGAAATGCCTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGGAGGGTCATAAACTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCGAGATCAATCGGTGATGAATATCTTAAACCATTTATTATCTCCAAACCAGAAGTTACTGTAACCAAGCGAACCGACAAAGACGAGTTCCTCATTCTAGGAAGCGATGGTCTGTGGGACGTTGTTTCAAATGAAATCGCCTGCAACGTAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTAAAGGTGGCGAACGACAGCCATGTCGCCGAAGCTGCAGCAGTGTTGGCAGAGCTCGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAACCAAACAGTTTCTCTCCATGA 1095 51.14 MHLQNKCTSRNFLRRPVAVMCDLTGMIKTKNVRRRRLRVRKLRYKWQRKVHAAEAEGNELGENGASESNGDRVLLSEKESISVFDCGLYSEMSIIGRRKEMEDEVRVELGLTTAINDATYDFFAVYDGHGGAQVAQVCRERLHRIVAEEIVDRGEMDEAEWGKLMERCFERMDNEVNSGAAAMKTVGSAVVAVVIGKEEVVVANCGDCRAVLARDGNALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFIISKPEVTVTKRTDKDEFLILGSDGLWDVVSNEIACNVVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNSFSP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1219063 1221708 + Tan0014819.1 Tan01g0124 737548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0124 364 SMART PP2C_4 75 354 IPR001932 -
Tan01g0124 364 ProSiteProfiles PPM-type phosphatase domain profile. 88 356 IPR001932 -
Tan01g0124 364 CDD PP2Cc 89 356 IPR001932 -
Tan01g0124 364 Pfam Protein phosphatase 2C 91 349 IPR001932 -
Tan01g0124 364 PANTHER PROTEIN PHOSPHATASE 62 355 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g0124 364 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169(InterPro)
Tan01g0124 364 FunFam Protein phosphatase 2C 51 82 363 - -
Tan01g0124 364 Gene3D - 83 361 IPR036457 -
Tan01g0124 364 SUPERFAMILY PP2C-like 86 358 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0124 Tan-Chr1:1219063 Tan01g0126 Tan-Chr1:1219063 5.90E-125 dispersed
Tan09g0623 Tan-Chr9:52973373 Tan01g0124 Tan-Chr1:1219063 4.30E-10 dispersed
Tan01g0124 Tan-Chr1:1219063 Tan01g0125 Tan-Chr1:1219063 3.50E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0124 K14497 - csv:101214188 543.888