Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0140 ATGAATTCAGCTCTCCACAGAGGGTTGGGATCTAGTTCTAATGGAATTAAAACTGAGAAGCTATTGGAATCTTCTTCTTCTAATAATTTCATGCCTGAAGGCTTGCGCTCAGAGAAGAAAATTCTTGATCCACAAGGGCTTTTTCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGATTGCTGTTTCGCTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATAATAGAAAGAAGTGTCTAAGGTTGGATGGGAAAGTGGAGACTGTAGCCTGTATATTGCGATTATTTACAGATTTATTCTATGTTCTGCATATTGTTTTTCAGTTTCGTACAGGATTTATTGCTCCCTCTTCCCGAGTATTCGGAAGAGGTGTTTTAGTAGATGATTCCTGGGCAATTGCAATGAGGTATCTGTCATCATACTTTCTAATTGACATTTCCTCAGTCCTCCCACTTCCACAGGTGGTGATTCTGATAAACATCCATAAAATGAGAGGTTTGAGATCGTTGAATACAAAGTACTTGCTGAAATATGCTGTATTATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTATAAAGAAGTTACAAGGACCTCAGGCATACTCATTGAAACCGCTTGGGCGGGAGCTGCATTTAATCTCTTTCTGTACATGCTAGCCGGTCATGTATTTGGGGCAATCTGGTACTTATGTTCCATAGAACGAGAAGCCCAGTGCTGGCAAAATGCTTGTGACAAGCATCCTGGCTGTGCCTCTACTTCCTTGTATTGTGATTACAGTTACAGTAATGAAGCGAACCTATTCCTCAATGGTTCTTGCCCAATCGAAAAGCCAAATATAGGAATTTTTAACTTTGGAATATTCCTTCAAGCCCTTCAAACTGACATTGTAGAATCGGATTTTCCAAAGAAGTTCCTTCACTGCTTTTGGTGGGGTTTAAGGAATCTAAGCTCTTTGGGTCAAAATCTCACTACGAGTAAGTGCACATGGGAAAATTGCTTTGCCATTTTGGTTTGCATCTCTGGCTTAGTGTTGTTTGCGTCTCTCCTCGGCAACATGCAGATGTATTGGCGATCCACAAACACGAGGGTGGAAGAGATGAGAGTGAGAAGAAGAGATGTCGAACAATGGATGTCCCACCGCTTACTCCCTGAAAATATGAGGGAACGGGTTCGAAGGTATGAACATTACATGTGGCAGGAAACCAGAGGTGTTGACGAACATAATCTACTGCATAATCTGCCTAGAGACCTCCAACGAGATATTAAGCGCCATCTTTGCTTGGCTTTGCTTATGCGACTCTTAACCATGACTACAAATGGTGGGAGAACTGGTTTCTTCAACTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTCCAATCGCTAACAGAAGTCGAAGCATTTGCTTTAAAACCTGAGGACTTGAAATTTGTAGCCTCTCAATACCGCAGGCTTAACAGCAAGCAGCTGCGCCAGATTTTCAGGTTTTACTCACAGCAATGGAGAACCTGGGCAGCTTGTTTTGTACAAGCAGCATGGCGTCGCCATCGAAGAAAGAAGCTTAGAGAGTCTCTCAGGGAAGAAGAGAGTAAGTTGAAAGATGCATTGGCTTGCCTCGAAGGGCGGTCAACGAGTTTAGGCGCCACCATTTATGCATCTAGATTTGCTGCTAACATGCTTTGCTTGATGAGACGAAATAGTACTAGGAAAGCTAGGATGTCCTTGCTGCTTCAGAAGCCAGCAGAACCTGATTTTACCTTGGAGGAAGATAACAACACATAG 1869 42.7 MNSALHRGLGSSSNGIKTEKLLESSSSNNFMPEGLRSEKKILDPQGLFLQSWNKIFVLSCVIAVSLDPLFFYVPVIDNRKKCLRLDGKVETVACILRLFTDLFYVLHIVFQFRTGFIAPSSRVFGRGVLVDDSWAIAMRYLSSYFLIDISSVLPLPQVVILINIHKMRGLRSLNTKYLLKYAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLAGHVFGAIWYLCSIEREAQCWQNACDKHPGCASTSLYCDYSYSNEANLFLNGSCPIEKPNIGIFNFGIFLQALQTDIVESDFPKKFLHCFWWGLRNLSSLGQNLTTSKCTWENCFAILVCISGLVLFASLLGNMQMYWRSTNTRVEEMRVRRRDVEQWMSHRLLPENMRERVRRYEHYMWQETRGVDEHNLLHNLPRDLQRDIKRHLCLALLMRLLTMTTNGGRTGFFNSDFLMAGDFCGEELLTWALDPHSSTNLPISTRTVQSLTEVEAFALKPEDLKFVASQYRRLNSKQLRQIFRFYSQQWRTWAACFVQAAWRRHRRKKLRESLREEESKLKDALACLEGRSTSLGATIYASRFAANMLCLMRRNSTRKARMSLLLQKPAEPDFTLEEDNNT 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1309758 1314136 - Tan0021979.1 Tan01g0140 737564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0140 622 Coils Coil 547 571 - -
Tan01g0140 622 FunFam Cyclic nucleotide-gated ion channel 1 369 433 - -
Tan01g0140 622 SUPERFAMILY Voltage-gated potassium channels 43 364 - -
Tan01g0140 622 Pfam Ion transport protein 52 362 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g0140 622 Gene3D Helix hairpin bin 365 433 - -
Tan01g0140 622 Gene3D - 55 363 - -
Tan01g0140 622 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 439 - -
Tan01g0140 622 SUPERFAMILY cAMP-binding domain-like 371 519 IPR018490 -
Tan01g0140 622 Gene3D Jelly Rolls 439 513 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0140 Tan-Chr1:1309758 Tan07g0460 Tan-Chr7:8450611 9.10E-235 dispersed
Tan01g0139 Tan-Chr1:1294459 Tan01g0140 Tan-Chr1:1309758 1.50E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0140 K05391 - csv:101214911 941.799