Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0142 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACATGTAGGAATAATCAGCAGAAGGGTTCAAACCAACAATATCTGGAGGAGTTTGCCTTCCAATCTTGGATTTGTTCACACCTGGAAACGTGAATATAGAACGGGTCTCATGATGATGGTCGATACAGGTGCATCGGATAATCGCGGGCTGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATGCCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGAAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTTGATGGTCAAACGGTCTGCCTCTTTGGCATTTTTGATGGTCACGGTGGATCCCGTGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGAAGGATACCAAATTAGCTATCAGTGAAACGTATCAACAGACAGATGCTGAATTTTTAAATTCGGAAAAAGATACTTTAAGAGACGATGGCTCTACAGCTTCGACAGCTTTGCTAGTTGGCAATCATCTATATGTTGCCAATGTTGGAGATTCGCGTGCTATAATATCAAAGGGGGGTGAAGCAATCCCTCTTTCTGAGGACCATAAACCAAATAGAACTGACGAGCGGAGGAGAATTGAAAATGCCGGTGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTTGGAGGAGTATTAGCAATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTCGTTGTGGCTGATCCCGAGATTCAGGATCTTGAAGTAGACAAGGACATCGAGCTGCTCGTTCTCGCAAGCGATGGACTTTGGGATGTGGTACGCAATGAGGATGCAGTACTAGTTGCAGGGAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCGTTTACCCGTGGTAGCGCTGACAACATAACATGCATTGTGGTGAAGTTTCATCACGACAATGCAGGTCCTGCTGCCTATACTCGAGAAAACAACTAA 1062 45.29 MVCSYNIRNVIAQAGHVGIISRRVQTNNIWRSLPSNLGFVHTWKREYRTGLMMMVDTGASDNRGLVVDKHPEKDEDGGYASGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLKDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPEIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAAYTRENN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1319155 1323538 + Tan0008497.1 Tan01g0142 737566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0142 353 PANTHER PROTEIN PHOSPHATASE 79 337 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g0142 353 SUPERFAMILY PP2C-like 89 339 IPR036457 -
Tan01g0142 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Tan01g0142 353 SMART PP2C_4 82 336 IPR001932 -
Tan01g0142 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Tan01g0142 353 CDD PP2Cc 94 338 IPR001932 -
Tan01g0142 353 Gene3D - 84 343 IPR036457 -
Tan01g0142 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Tan01g0142 353 SMART PP2C_SIG_2 74 338 IPR001932 -
Tan01g0142 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0142 Tan-Chr1:1319155 Tan01g3523 Tan-Chr1:100383347 1.80E-94 dispersed
Tan06g2397 Tan-Chr6:76260356 Tan01g0142 Tan-Chr1:1319155 1.30E-15 dispersed
Tan09g1860 Tan-Chr9:69871786 Tan01g0142 Tan-Chr1:1319155 7.30E-13 dispersed
Tan01g0142 Tan-Chr1:1319155 Tan02g0200 Tan-Chr2:1718196 1.30E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0142 K17506 - csv:101203681 678.322