Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0147 ATGGAGAATTTGGGGGAATGGGAGCAGAAGAATCTGAAAAATGAGCTGCTTAAAGGGAAGGAATTGGCAAAGCAACTCCAAATTCATCTAAATATGAGACCTTCATCATCATCCATGGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCACATGATGTTGGTGAATTATTGGTTCAGAAGATTTTATCTTCATATGAAAAGGCACTGTCATTGCTCTGTTCAAATGGGATCCAAAGATCTGAATCTCCTTCCTCTCTTAATGGAAGTCCAAGGAGTGAAGACTCTGACCCTGACCAAAGAAATGCTGCTTCTCGTAAAAGGAACATTCTTCCAACTTGGACCCACAAATTCCAAGTTAGTCCAGGAATGGCCCTTGAAGGCTCTATTGATGATGGCTTTTGCTGGAGAAAATATGGTCAAAAAGGCATTCTTGGTGCCAAACATCCAAGAGGCTATTACAGATGCACACATAGGAACCTCCAAGGCTGTGTTGCAACAAAACAAGTTCAACGCTCCGACGACGATCCGACCGTCTTTGAAATCACGTATCGTGGAAACCATACTTGCAGCCAAGTTTCCAACCTTGGTACTACTCCATCAACAACAGCAGAGTTTCAGAAACAAAACAGTAGAATTGATCAAAATTTGGTGCAAAGCCACCCTGTAGTTGATGACCAAAATTTGGTGCAAAACCAACAAACATCACCTGATGCTCTATTGAACTCATGGGCATCCTTAAGAGTCATAACTGAAAACCTTGACACAACTCATGAACCAACATTGTTTCCTTCTTTTAGCTATGATCCCACATCAAAATATGAAGCTGCAGTCCGTGTCGAGCCGACGTCGACTGTCGATGTTAACTTTACGGAGTTTTCGCCTTCGTTTTTGTCCCCAACAACATCTGGTTCTGGATTGAGCTATTTCTCTGCCTCCACAAGTGGTTTCAGTGAAGGATTTGTTGGAAGTCAGAGGTTGCAGCCAAATAAATCAGAGTTATCAAACTCTCAAACTCTTGGCTTAGACTTCCCATTTGGTGAGCTTGAAATGGAGCCAAGTTTCACTTTTGACAACACAAACTTCTTCTCCTAA 1092 41.94 MENLGEWEQKNLKNELLKGKELAKQLQIHLNMRPSSSSMAASSSSSSSSSHDVGELLVQKILSSYEKALSLLCSNGIQRSESPSSLNGSPRSEDSDPDQRNAASRKRNILPTWTHKFQVSPGMALEGSIDDGFCWRKYGQKGILGAKHPRGYYRCTHRNLQGCVATKQVQRSDDDPTVFEITYRGNHTCSQVSNLGTTPSTTAEFQKQNSRIDQNLVQSHPVVDDQNLVQNQQTSPDALLNSWASLRVITENLDTTHEPTLFPSFSYDPTSKYEAAVRVEPTSTVDVNFTEFSPSFLSPTTSGSGLSYFSASTSGFSEGFVGSQRLQPNKSELSNSQTLGLDFPFGELEMEPSFTFDNTNFFS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1369909 1371729 + Tan0022209.1 Tan01g0147 737571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0147 363 MobiDBLite consensus disorder prediction 78 107 - -
Tan01g0147 363 Gene3D WRKY domain 123 191 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0147 363 ProSiteProfiles WRKY domain profile. 124 187 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0147 363 SMART WRKY_cls 129 191 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0147 363 MobiDBLite consensus disorder prediction 29 49 - -
Tan01g0147 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 311 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Tan01g0147 363 SUPERFAMILY WRKY DNA-binding domain 128 191 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0147 363 FunFam WRKY transcription factor 53 115 192 - -
Tan01g0147 363 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0147 363 MobiDBLite consensus disorder prediction 78 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0147 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0147 Tan-Chr1:1369909 Tan06g1706 Tan-Chr6:32084807 5.10E-36 dispersed
Tan01g0147 Tan-Chr1:1369909 Tan01g0148 Tan-Chr1:1369909 1.20E-197 tandem
Tan04g1447 Tan-Chr4:17160763 Tan01g0147 Tan-Chr1:1369909 1.10E-21 transposed
Tan01g0147 Tan-Chr1:1369909 Tan01g1100 Tan-Chr1:10849927 2.30E-44 wgd
Tan01g0147 Tan-Chr1:1369909 Tan10g0137 Tan-Chr10:1480640 4.20E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g867 . . Bda05g00111 . Bpe03g00242 . Bma10g01288 . Cmo16g00074 Cmo18g01329 . . . . . . Cpe14g00056 Bhi01g01452 Tan01g0147 . . Hepe07g0088 Mch10g0087 . . . . . . . . . . . . . . . . Blo07g00349 . . . . . . . . . . Cma16g00071 Cma18g01300 Car16g00062 Car18g01216 Cpe09g00042 . . . . . . . . Cla05g00948 Cam05g1039 Cec05g1044 Cco05g1038 Clacu05g1030 Cmu05g0980 Cre05g1059 . Csa03g02198 Chy06g01255 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007354 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26248 PF03106 WRKY 6.20E-26 CL0274 Tan TF