Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0171 ATGGAGAATATGCAGTATGCCGAGGAGCTTGTGAGAGAGTTCCTTGTCTTTAGGGGGTTTACAAGTGCTCTTCAAGCTTATGAGAGTGAGCTGAGCACAGATATCGGAAAAGGGTTCCAAGTGGACAAGATTTTAGATTTAATCTTCTCAATATATATACCCAAATTTGAGGCAGAAAAGTTGGTGGGGCTGCTAAGTTTTTTCAAGCAGTGCCTTGCTTCTTCATCTGACAATACATTTCTTTCTACCGTGTCAAAATTGGAGGTTTCCATCCTTCGTTATTATATGGTATATGGCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAAATAAATGGCAACGATCTATTGCAGAGGACTAAAGATTGGACCCCATGGTTTGCCATGCCATACCTAAAGAATCCAAAGTTTGATCCCAACTTTCACGTTTATTTTACAAAGGAGTGGTATGAAGCGCTACATGTTTCTGTAAGGAATTTCTTCAGCGAAGTCTTCAATGGTACTCGCATTCCTGCCCTACTAAAGCTCAGTTCAGAGAAGAATACAGTTAATCATCTGAAAAGAGACATCAAGCAGCTCAATCTTAAACTAGCACAACTTCAGGCTTTATTGGAGGAAAAAGAGGCTCATCTGTGCCACTTAAGAAGCCTGGTGAACAGTTCTTCCAGTGTGGTGAACGAAGAGAATGTTCCTTCATCAAATGATGCTCAGGAGATCTGTCCCCCTCCATCTACACAAGTTGGGGAAACACAACTGGCTCGAGATGGGGTTTTAGCTGGCTCTGATAAGCATACTGCTTCGAATGAAGATTCAAGTTCTTCATTAACTCTTTGCACAGGAGACGAAGTTGGTGATCCTAGTCATAGTTGTGAAGATGGTCGTCAAATGGTAAATAGCGGAGAAGTCCATGTACAAGAAGAATTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACGTATGAGTCGTCCACTCCAGCTTCTAGAAATGCAACAATTTACTGCGGCGCAGAGATTATGTCACTTGATTGGGAATGTAAATCCGATCGCCTACTTCTAATAGGCACTGCTGATGCTGGCATTAAAGCATGGAATGTTGATGCAAAAAGAGTTGTGTGTGATCTCAGCACGACTGATATGTTCCCTAGCGTGTTGGATATCAAGTGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTTCAAGTTATGCGGATGGTTTGGGGTTTGCTTCACTAACAGTTTGGAACATGAGAACATGGAAGTCAATGACAGTCCTTCCTCTTGGTAAGGATCCACCTGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATTCTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGGTATCCTTCCAATACATTTTAAGTGCTTAAATTTCTCGTAA 1539 41.91 MENMQYAEELVREFLVFRGFTSALQAYESELSTDIGKGFQVDKILDLIFSIYIPKFEAEKLVGLLSFFKQCLASSSDNTFLSTVSKLEVSILRYYMVYGIQSGRTDKVLEFLKINGNDLLQRTKDWTPWFAMPYLKNPKFDPNFHVYFTKEWYEALHVSVRNFFSEVFNGTRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCHLRSLVNSSSSVVNEENVPSSNDAQEICPPPSTQVGETQLARDGVLAGSDKHTASNEDSSSSLTLCTGDEVGDPSHSCEDGRQMVNSGEVHVQEEFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYESSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLSTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYADGLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFGILPIHFKCLNFS 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1581951 1588656 - Tan0012811.1 Tan01g0171 737595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0171 512 Coils Coil 179 213 - -
Tan01g0171 512 Pfam WD domain, G-beta repeat 474 498 IPR001680 GO:0005515(InterPro)
Tan01g0171 512 Pfam WD domain, G-beta repeat 319 353 IPR001680 GO:0005515(InterPro)
Tan01g0171 512 Gene3D - 306 506 IPR015943 GO:0005515(InterPro)
Tan01g0171 512 PANTHER OS05G0299300 PROTEIN 1 500 - -
Tan01g0171 512 MobiDBLite consensus disorder prediction 229 251 - -
Tan01g0171 512 SMART WD40_4 360 399 IPR001680 GO:0005515(InterPro)
Tan01g0171 512 SMART WD40_4 459 500 IPR001680 GO:0005515(InterPro)
Tan01g0171 512 SMART WD40_4 315 354 IPR001680 GO:0005515(InterPro)
Tan01g0171 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 357 - -
Tan01g0171 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 363 IPR001680 GO:0005515(InterPro)
Tan01g0171 512 MobiDBLite consensus disorder prediction 261 280 - -
Tan01g0171 512 SUPERFAMILY WD40 repeat-like 313 501 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0171 K24760 - - csv:101209643 905.205
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32