Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0211 ATGGTAGTTTCTCTGAGACTACCTTCGCTCTCCTCTTTGCTTTCCCCAGCTTCCCCTTTCTCCTTCTCCCGGCGAGCTCTGGGGATTTCATGGCGGCAGCAACGCCCGTTCCGGTTGCCGCTGCCTGCTTCTGGATTCTCTGTGCGAAGTTCGTCCACCGGGACCGAAATCCGTGTCGACAACTCGAAGAATCGAGTTCCAGAAGGAGCTATCACGCCTCGGTCGCAGGACTTCAATGCTTGGTATTTGGATGTTATTGCCAACGCTGAGCTCGCGGATTATGGTCCTGTTCGAGGTACCATGGTTATTCGTCCCTATGGCTATGCCATATGGGAAGCAATACAGGAATATTTGAATGTTAAGTTCAAGGAGACCGGTCACGAAAATGCGTACTTTCCGCAGTTTATACCATACTCATTCATTGAGAAAGAAGCTAGTCATGTCGAGGGGTTTAGTCCGGAGTTAGCTCTTGTAACCATTGGAGGAGGGAAAGAACTTGAAGAAAAGCTTGTGGTTCGACCGACGAGTGAAACCATTGTGAACCACATGTTTACTCAGTGGATTCATAGTTACCGCGATCTTCCTTTGATGATTAATCAGTGGGCAAATGTTACCAGATGGGAGATGAGGACAAAACCATTTGTAAGAACTCTTGAATTTCTGTGGCAGGAGGGTCATACTGCGCATGCCAGTCCAGAAGAGGCAGAAAAAGAGGCTATTCAGATGATTGACATATATACAAAATTTTCTTATGAGCAAGCGGCAATACCTGTTGTTGCAGGACGCAAATCAAAGGTGGAGACATTTGCTGGTGCGGACAAGACCTATACAATAGAGGCCATGATGGGGGATCGAAAAGCACTGCAGGCAGGAACCAGCCATAACCTTGGGCAGAACTTTTCTCGTGCTTTTGGAACACAGTTCACTGATGAAAATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAATTAGTACACGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAAGCTTGCTCCAATACAGGTGGTAATCATACCCATTTGGAAGAAGGAGGATGATAAAGCAGAAGTTCTTAGTGCTGCTTCTTCTGTAAAAGTAAGCCTTCAGACTGCAGGGATAAAGGTTAAACTTGATGAGTCTGAACAGAGAACTCCAGGATGGAAATTCAATTTCTGGGAGATGAAGACTTGGATTTATAGGGCGTTCCTTTGA 1248 45.91 MVVSLRLPSLSSLLSPASPFSFSRRALGISWRQQRPFRLPLPASGFSVRSSSTGTEIRVDNSKNRVPEGAITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHENAYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHASPEEAEKEAIQMIDIYTKFSYEQAAIPVVAGRKSKVETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDGGLMLPPKLAPIQVVIIPIWKKEDDKAEVLSAASSVKVSLQTAGIKVKLDESEQRTPGWKFNFWEMKTWIYRAFL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1884256 1889022 - Tan0020163.2 Tan01g0211 737635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0211 415 Gene3D Bira Bifunctional Protein; Domain 2 66 345 IPR045864 -
Tan01g0211 415 FunFam Proline--tRNA ligase 66 346 - -
Tan01g0211 415 NCBIfam proline--tRNA ligase 72 407 IPR004499 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Tan01g0211 415 PANTHER PROLYL-TRNA SYNTHETASE 62 409 IPR004499 GO:0004827(PANTHER)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006433(InterPro)|GO:0006433(PANTHER)|GO:0009570(PANTHER)|GO:0017101(PANTHER)
Tan01g0211 415 SUPERFAMILY Class II aaRS and biotin synthetases 77 340 IPR045864 -
Tan01g0211 415 Pfam Anticodon binding domain 353 412 IPR004154 -
Tan01g0211 415 SUPERFAMILY Class II aaRS ABD-related 342 412 - -
Tan01g0211 415 PRINTS Prolyl-tRNA synthetase signature 200 208 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Tan01g0211 415 PRINTS Prolyl-tRNA synthetase signature 209 220 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Tan01g0211 415 PRINTS Prolyl-tRNA synthetase signature 129 147 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Tan01g0211 415 PRINTS Prolyl-tRNA synthetase signature 170 181 IPR002316 GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro)
Tan01g0211 415 Gene3D - 346 415 IPR036621 -
Tan01g0211 415 CDD ProRS_core_arch_euk 77 336 IPR033721 -
Tan01g0211 415 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 98 346 IPR006195 -
Tan01g0211 415 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 165 334 IPR002314 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0211 K01881 - - csv:101217773 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0211 Tan-Chr1:1884256 Tan11g1654 Tan-Chr11:16005397 6.60E-88 dispersed
Tan01g0210 Tan-Chr1:1884256 Tan01g0211 Tan-Chr1:1884256 1.20E-238 tandem
Tan01g0211 Tan-Chr1:1884256 Tan01g0212 Tan-Chr1:1884256 9.10E-239 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031598 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2