Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0233 ATGGAAAGATGCAATTCATCGCTGCTGCAGAATTCAGAAATAGGAATCGACCTATCCAACCATCTGAGACTAGAGTCTGTGACTTGTAAATTGAATTTTCTAGACACTCAAGAAAAAGACGTTGCATTTGATAGAATAAGCAGGTTTAGACATCAAGGTTTGGTGGATCCAAAATATTCCAATAATGGAGTCATGGGTACTTCAAGGACAAGACTATTATTAAAGAATGAGGCAGTAAAAGGAGGACAACAAGTTGGCCAGAGTCGTGGTTTGCAAGAAGAAGCCTTGATCAATGTTAAGTCGATAAAAGAATTTGAGGGCGTGAAGGTGTGTCTGGAGGAAGATGCCATGGGTGCTAATTTCGAGGCTAATTCATTAGAAAGCTCAGGTATGGGGGAGGTGAAAAAAAGAAAAGAGATGGTAGAAAATTTAGAGAGAGAAAAAAAAGAAGTAGAACGGATGAACAAAAAGCGTGATGAGCTCTTGAAAGAACTATACGATGTTCAAGAGCAGAAATTGGTACTTGAGAGAAAAGCTTCAGAGTACCGTTGTGATGTGGAGGAGTTGGAGAAGAAGATGTTTGATGCTGTTGGCCTCTTAGTAAGCTTCAAGGAAAAACGAGATAAGTTGCAAATAGAACATGAAGGTGCAAAGAACAAGCTTAGACTGCTGAAGAATATGGTTAAAAGGGAACCTACATGTTTTCGCAATGTGGAAATGCCTACATTCTCATTCATGGAGATAATTGAGGCAACGAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGTAGTGTTTATAAAGGCCACCTTCGCCACATGGATGTTGCTCTAAAAATGCTGCCTTCGTATGGTTCTCATTCTCAATCAACGTTCCAATACGAGGTTGAGGTCCTGAGTAGGGTAAGGCATCCCAACCTGGTTTCAATTATTGGAGCATGTCCAGAATCTAGGTTAATAGTCTATGAGAATTTGAAAAATAGCAGCTTGGAAGACCATCTTTCCTGCAAAGATCGCAATCGCCCACTTCCATGGCAAGTACGGATTCGTGTTGCTGCTGATATCTGCTCAGCCCTTACATTTCTCCATTACAGCGAGCCTTGCATTGTCCATGGAGATATAAAACCAAGCAAAATCCTACTTGATGCCAATTTTGTTGCTAAACTAAGTGGCCTGGGCATCTCTCGTTTGATCCCACAAGAGAAGGCCTTCAATTCTGCCTCAGCATATAATATGTTGAAAGAAAATAATCCATATATAGATCCAGAATATCTTGAGACTGGAAGGTTCACTCCAGAATCAGACGTTTACTCTCTTGGTGTTACTTTTCTGCGAATTTTAACTGGCAGATCTCCTTCGGGAATTGTAAAAGATGTAAAATGTGCTCTAGAAAATGATAATATTGGTGCCATTTTGGACTTGTCAGCTGGAGACTGGCCTCATGATCTAGCAGAACAATTGGCTCTTGTCTCTTTGAGGTGCTGTGCAAAGGAAAAGTCGGATCGGCCTGACCTTGTCTCCGAATTGTGGAGTGTTTTGGAGCCAATGAGATCCATTGCCTCAGCATCATTTTCGAGTTCAAAGCAACACTCTCGAGTGCCTGCCCATTTTACCTGTCCCATTTTTCAGGAAATCATGAAAGATCCGCTAATTGCTGCAGATGGATTCACATACGAAGCTGATGCAATAAGAGGATGGTTCAAAAGTGGCCACGACACTTCTCCGATGACAAATCTTAAACTTGAGCACTGTAATCTTGTGCCAAATTATGCTCTTCTGAATGCAATTCAAGAGTGGCAGCATCAGCTATGA 1821 41.46 MERCNSSLLQNSEIGIDLSNHLRLESVTCKLNFLDTQEKDVAFDRISRFRHQGLVDPKYSNNGVMGTSRTRLLLKNEAVKGGQQVGQSRGLQEEALINVKSIKEFEGVKVCLEEDAMGANFEANSLESSGMGEVKKRKEMVENLEREKKEVERMNKKRDELLKELYDVQEQKLVLERKASEYRCDVEELEKKMFDAVGLLVSFKEKRDKLQIEHEGAKNKLRLLKNMVKREPTCFRNVEMPTFSFMEIIEATRNFDPSWKIGEGRHGSVYKGHLRHMDVALKMLPSYGSHSQSTFQYEVEVLSRVRHPNLVSIIGACPESRLIVYENLKNSSLEDHLSCKDRNRPLPWQVRIRVAADICSALTFLHYSEPCIVHGDIKPSKILLDANFVAKLSGLGISRLIPQEKAFNSASAYNMLKENNPYIDPEYLETGRFTPESDVYSLGVTFLRILTGRSPSGIVKDVKCALENDNIGAILDLSAGDWPHDLAEQLALVSLRCCAKEKSDRPDLVSELWSVLEPMRSIASASFSSSKQHSRVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFKSGHDTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2039938 2054081 - Tan0022849.4 Tan01g0233 737657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0233 606 CDD RING-Ubox_WDSUB1-like 537 592 - -
Tan01g0233 606 Pfam U-box domain 536 604 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g0233 606 Pfam Protein tyrosine and serine/threonine kinase 260 508 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0233 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 538 606 IPR013083 -
Tan01g0233 606 ProSitePatterns Protein kinases ATP-binding region signature. 261 282 IPR017441 GO:0005524(InterPro)
Tan01g0233 606 Coils Coil 134 192 - -
Tan01g0233 606 PANTHER OS02G0152300 PROTEIN 103 600 IPR051348 -
Tan01g0233 606 ProSiteProfiles U-box domain profile. 535 606 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g0233 606 Coils Coil 200 227 - -
Tan01g0233 606 SMART Ubox_2 539 602 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g0233 606 Gene3D Transferase(Phosphotransferase) domain 1 328 537 - -
Tan01g0233 606 SUPERFAMILY RING/U-box 528 605 - -
Tan01g0233 606 ProSiteProfiles Protein kinase domain profile. 255 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0233 606 Gene3D Phosphorylase Kinase; domain 1 234 327 - -
Tan01g0233 606 SUPERFAMILY Protein kinase-like (PK-like) 231 508 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0231 Tan-Chr1:2039938 Tan01g0233 Tan-Chr1:2039938 0.00E+00 dispersed
Tan01g0233 Tan-Chr1:2039938 Tan10g0201 Tan-Chr10:1942238 2.90E-129 dispersed
Tan01g0232 Tan-Chr1:2039938 Tan01g0233 Tan-Chr1:2039938 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66984 PF07714 PK_Tyr_Ser-Thr 1.60E-34 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0233 - - - 0.0