Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0263 ATGGGGAAACAGAAGCAACAAGTGATTTCTCGATTCTTTGCACCAAAACCCAAATCCCCATCTTCTTCATCTTCATCACCGCCATCTCTTTCTTCTTCCTCCACCGCCATAACCCCCCCTAAGATATCAGCAACAGTCACTTTCTCTCCTTCCAAACGCCTCATTTCTTCATCACTCGCCTCTCAGTTAATCCCACCCAAATCCTCTAAACGCCCAAAACTCTCTCCTCATACCCACAACCCTCTGCCTCCCATCCCTAATCCCTCGCTTCACAAACGATTCCTTGAGAAGTTCCTTGAACCCATCCAAAACCCTTTAGAATCTTCTAATCAAAACCCAAAAGCCCCAACCAGCGCTGCTGCTAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTCAAGGAGAGGTACCCCGATGTTCTTTTGATGGTGGAGGTTGGTTACAGGTACAGATTCTTTGGCGAAGATGCTGAAATTGCGTCTCGTGTTTTGGGTATTTATGCCCATTTGGATCGTAATTTTATGACTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGCGCAGGGTATAAGGTGGGTGTTGTCAAGCAAACAGAAACTGCTGCGATTAAGGCCCATGGGTCGAATAAGTTGGGACCCTTTTGCAGGGGATTGTCGGCTTTGTATACTAAAGCAACATTGGAAGCAGCCCAGAATTTAGGGGGAGGTGAAGAAGGATGTGGGGGAGAGAGTAACTACTTGTTCTGTGTGGTTGAAAAGAGTATGTTGGTGGAAAATTTTGACTGTAGAATTGAAAATGGGGGTGATGTGAAAATTGGAATGGTTGCAATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAATTTTATGAGAAGTGGGCTTGAGGCACTGCTTTTGAGTTTGTCTCCTGCTGAGTTACTTCTTGGGGATCCAATATCAAAGCCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCGTGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTATATGAAAACGTTGACCAAGATAACTTAGCTGATCATCAAAACCCAGATACAGTGTTGGTTGAACAAAAAAGTGATCGCATAGCAATTAAGGAAATAATGGACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTGACCATTCGTCACTTAAAGCAATTTGGTTTAGAAAGAATTGTGTCCTTGGGATCTTCTTTTAGACCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACACTTAAACAACTTGAGGTTCTGAAGAATAATGATGACGGTTCTGAAACTGGCTCCTTATTACAGTCCATGAATCACACTCTTACAATATTTGGTTCAAGACTTCTTCGGCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATTGCTCGTCAAGAGGCCGTTTCTGAGATTGCTGCATCTATGGCATCTTCAAAAGTATCTCAAAATATCAGAGAGTTAGATGAAGAAGATTCTGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCAGTGTTAACAACTTTGGGAAGGGCACCAGATATTCAGCGTGGCATAACAAGAATCTTTCACCGAACTGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTTTGTTTGCGGGAAAACAGCTTCAGCAGTTTCACATTGATGAAGAGGATTACAATTATTCCAGTGAAAGTATGATTGGCTCCAAGCTCCTAAGAAAGCTGATTTTATCTGCTTCTTCCTCTGGTTTAATTAACACTGCTGCAAAACTTTTGTCGACGATCAGTGAAGAAGCTGCAGATCAAGGTGACCTACCAAACCTAATGATCATCAGTAGTGACCAATTTCCGAAGGTTGCTATAGCTCGAAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATGCTCTGATCACCTTATACCGCAAGCAGCTTGGAATGCGGAAGTTGGAATTTACTAGTGTGTCTGGAACTACGCATTTGATTGAGTTGGCCTTAGATGTAAAGGTACCTACAAATTGGGTTAAAGTCAATAGTACCAAGAAAACCATAAGGTATCACCCACCTGAAGTATTGGCTGCGTTAGACGAGCTATCACTGGTGAATGAGGAGCTCATGGCGGCATCTCGTGATGCTTGGGATGGTTTTCTAAGTGGGTTTAGTAGATATTATGCAGAGTTTCAAGCTGCTGTTCAAGCACTGGCTTCCATTGACTGTCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAAGTATGTTCGTCCAGAGTTTGTACGTGATGATGAACCTGCTCAAATACTTATATGTTCTGGACGCCATCCGGTTTTGGAGAGTACATTACAAGGCAATTTTGTCCCGAACGACACGAATTTGCATGTGAATGGAGAGCATTGTCAAATTGTTACAGGACCAAACATGGGTGGAAAAAGTTGCTATATTCGACAAGTTGCTCTCATTGCTCTTATGGCTCAGGTCGGTTCCTTTGTTCCGGCATTGTCTGTGAAACTTCACGTCCTGGATGCTATATACACTCGAATGGGTGCTTCCGACAGTATTCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCACATTCCTTGGTTATTATTGACGAGCTTGGCAGAGGTACAAGTACACACGACGGCGTCGCCATTGCTTATGCAGCTTTGCATAATCTCCTCCACCACAAGAAATCTTTGGTCCTCTTTGTCACCCACTATCCTAAAGTTGCTGATATTGTAAAAGAGTTTCCAGGATCTGTGGGGGCATACCATGTTTCGTATCTTACTTCTTCACACAATAATCCAAGCTCGTCGGCCCCAAAATCCGATCACGACGACGTTACTTATCTGTATAAGCTTGTTCCTGGTGTTGCAGAGAGCAGTTTTGGTTTCAAGGTTGCCCAACTTGCACAGATACCTTTGTCATGTATTGCTCGGGCCACGAAAATGGGGGCGTGGTTAGAAGAAATAGTAACCAGAAGAGCACAACGAAAATCCAGAGAACAGCATTTGCAAGAAACATCGGGCAACGGGTTGGAATTGGAATATTCCCAGTGCTTCCTTGGAGTTGTTGGTGAGTCAGAAGAGAGAATTGATGCTTATGAGGAATTCTTTCTGTTCTTGAAAGCTGCAATGTGTGCTGCTGATGATATGGGAAAAAATTGCCATCAATTTAACCAAGCTAAAAGCATGGCCATGGAATTGTTAGGAAGGTGA 3339 42.68 MGKQKQQVISRFFAPKPKSPSSSSSSPPSLSSSSTAITPPKISATVTFSPSKRLISSSLASQLIPPKSSKRPKLSPHTHNPLPPIPNPSLHKRFLEKFLEPIQNPLESSNQNPKAPTSAAAKYTPLELQVVDLKERYPDVLLMVEVGYRYRFFGEDAEIASRVLGIYAHLDRNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQNLGGGEEGCGGESNYLFCVVEKSMLVENFDCRIENGGDVKIGMVAMEISTGDVIYREYDDNFMRSGLEALLLSLSPAELLLGDPISKPTEKLLLGYAGPASNVRVERVSRDCFKDGSALAEVMSLYENVDQDNLADHQNPDTVLVEQKSDRIAIKEIMDMPNLALQALALTIRHLKQFGLERIVSLGSSFRPFSCKMEMTLSGNTLKQLEVLKNNDDGSETGSLLQSMNHTLTIFGSRLLRQWITHPLCDRDMIIARQEAVSEIAASMASSKVSQNIRELDEEDSDVMVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIDEEDYNYSSESMIGSKLLRKLILSASSSGLINTAAKLLSTISEEAADQGDLPNLMIISSDQFPKVAIARKEAQSAREKLDALITLYRKQLGMRKLEFTSVSGTTHLIELALDVKVPTNWVKVNSTKKTIRYHPPEVLAALDELSLVNEELMAASRDAWDGFLSGFSRYYAEFQAAVQALASIDCLYSLAILSRNKKYVRPEFVRDDEPAQILICSGRHPVLESTLQGNFVPNDTNLHVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSVKLHVLDAIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSHSLVIIDELGRGTSTHDGVAIAYAALHNLLHHKKSLVLFVTHYPKVADIVKEFPGSVGAYHVSYLTSSHNNPSSSAPKSDHDDVTYLYKLVPGVAESSFGFKVAQLAQIPLSCIARATKMGAWLEEIVTRRAQRKSREQHLQETSGNGLELEYSQCFLGVVGESEERIDAYEEFFLFLKAAMCAADDMGKNCHQFNQAKSMAMELLGR 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2231710 2239384 + Tan0001948.2 Tan01g0263 737687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0263 1112 Coils Coil 649 669 - -
Tan01g0263 1112 FunFam DNA mismatch repair protein 113 243 - -
Tan01g0263 1112 SUPERFAMILY DNA repair protein MutS, domain I 116 232 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 Gene3D DNA repair protein MutS, domain I 113 240 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 MobiDBLite consensus disorder prediction 59 88 - -
Tan01g0263 1112 Gene3D - 623 749 - -
Tan01g0263 1112 Gene3D MutS, connector domain 247 435 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 Pfam MutS domain V 828 1025 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 Pfam MutS domain I 124 234 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 SUPERFAMILY DNA repair protein MutS, domain II 249 372 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 MobiDBLite consensus disorder prediction 16 42 - -
Tan01g0263 1112 ProSitePatterns DNA mismatch repair proteins mutS family signature. 906 922 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 Pfam MutS domain II 273 337 IPR007860 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1029 IPR027417 -
Tan01g0263 1112 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 127 1044 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0006312(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Tan01g0263 1112 SMART DNAend 456 808 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 FunFam DNA mismatch repair protein 247 433 - -
Tan01g0263 1112 Pfam MutS domain III 441 773 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 SUPERFAMILY DNA repair protein MutS, domain III 441 777 IPR036187 -
Tan01g0263 1112 SMART mutATP5 825 1026 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 FunFam DNA mismatch repair protein MSH3 781 1055 - -
Tan01g0263 1112 MobiDBLite consensus disorder prediction 1 42 - -
Tan01g0263 1112 Gene3D - 781 1059 IPR027417 -
Tan01g0263 1112 Gene3D - 438 773 - -
Tan01g0263 1112 PIRSF Msh6 115 1067 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Tan01g0263 1112 FunFam DNA mismatch repair protein Msh3 623 749 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0263 K08736 - - csv:101214720 1759.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0263 Tan-Chr1:2231710 Tan06g0735 Tan-Chr6:5648990 8.20E-77 dispersed
Tan01g0262 Tan-Chr1:2231710 Tan01g0263 Tan-Chr1:2231710 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36