Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0269 ATGTTGCTGCAAATTTTTTCACTATACAGGAATTTACTTCTTCATGTCATACTGTCTCTCTCGCTCTCTGTTTTCATCATCTTCTTCAAAGTCCCAACCCTTTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACGCCAGCAGCGGCGTCCGAGCCGCGATTAGAAGACCCGACGGCTCTAGCTCCGGTTCTGGACTAGAGGGGTACCGAAACTTGTCCTCAACTGGTGTCGCTGAGATCAGGAAAAGAACAAAGTCGAAGGACAAGGTTGAGTTTGACGAAAGCAAGGCGCAAATCTTCAGGTTAAAGCTGGATGAGAATCATCTGCAAACGCGGATCTATTTCAAAGAGTACAGAGATGGTTTCACTTTTTCATTTGTGGGCATTTCTTGTTTACTGCTGCAAATTTTCCTGGGCGCATCTAAAGATTCTGGGGGTTGGGGAAATGGGATTTTTGTTCCTCTTCTGTTTGCGATCTTAGCTGGATGTAAGTTGTTTGTATCGCTTGGTAAGGTTGCTTTGGAGAAATCTGCGTCTAGGTCGTTGGATAGGCAATTGAGCTTACTTTTTGGAGTGTGTGGGTTTCTTTTTGGACTTCTAACCTGTTCTGCTTTTAGCCCTCTTATATTGGATTTTGATCTTGGTGAAATGGGTGGTATGGGGGCATGTTTCGTTGCTATCTTAATGGGCTGTTTTGCGGGGTTTTTGTTTATACCTGCAACAAAAGTCGCTCGATCATTTTGGCTTGGAACTGATCAAATTAGATGCAACTTGGATATGGTTTATTGTGGATGGTTTTCTCGGATGATTTTGTATGGAAGTCAGGTGGCCATGTTTTTCACCACCTTGCTTTGGGTCAACCCATTAGCTGAAATTTTCATTAACAAAAACATTGGCGAAAGTGCAATTGAACATATGTCTGGTGAAATCCGAAATGCTGACAGATTGGTTGGAAATATAGGATTCTCAAAGGCAGATTTTGCCAAGCTTAGGCTCTGGTGTTTGTCACTGTCTGGTTTCTTGCAGATCATTTCTGTAAGGCAAAACTTGCAAATGTATCTGAACGAAGCTCTGTTATCTTGGTACCAAAGACTGCATGCTGGGAAGGTTCCTGACTTGGATTTCAGTAGAGCGAAGGTTTTTCTGCACAATCACTACTTATGTGTGGCTGTTCTGCAGTTTTTTGCTCCACCAGCCTTAGTTTTGCTTTTTATTGGGTTATCTCAAATTGGTGTCAACTCTTTGGAAAATACCAGTTTGTCTATCGCCAAAACCACGCCTACTGCCGCCGATTCACAGAGATCTGTGCCCACTCCTTTCTTGACGAAAACCTATCAGCTCGTTGACGATGAGACAATCGACCATGTCATTTCCTGGAACGATGATGGATCTACCTTCATCGTTTGGAACACCATGGCCTTCGCTAGAGATTTGCTCCCCAAGCATTTCAAGCACAATAACTTCACTAGCTTTCTCCGCCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGACCGGTGGGAGTTCGCGAACGAGTGCTTTCGCAAGGGCAAGAAACAACTTCTATGTGAGATTCAGCGTCGGAAATTGGTCACTTCGGTGCCGTTCACTGCTTCTAACGCGGTTCTGGTGACAACCGTTTGTGCTCCGGCGACTCCGTCTGCGCAACTATTAACATTGACAGGGAGTTCTTCCGGTGAAGAACAAGTGATTTCGTCGAATGTAACTCCGACGAAAGATCTTGCGGATCTGATTGATGAGAACGATCGACTGAGAAAAGAGAAAGTTCGGCTTACGGAACAATTAGTTGAGGTGAAATCTCTGTGCAACAACATCTTCTCGTTGATGTCGAGCTTCGTTGAAAATCAATTTAAGAGCAGTTTCAAAGTGAGAGAGAGCGTCTTGACATCGGCAAAATCGCTCGATCTTTTCCCGGTAAAGCGGTCTTCTGCCGAAGACGAAACGGCGGAGGCCGCAGAGGCGGAGACCGAACAGATCGGTGCAGCGATCGGAACGAAGCGGCCGAGGGAATACAGGGAGGGGCCGGAGGCGGCGGAGGATGATACTACTTTGCGACTGCAACCGCCGGATAGATCGGAAGTCGAATCAGAGCAGATAAATTGTCAAAATAAAGTTGATAATCAGAAAACGTGGCATAATCAGGTCTACTGA 2181 45.16 MLLQIFSLYRNLLLHVILSLSLSVFIIFFKVPTLFLHGIFTYIHPDNASSGVRAAIRRPDGSSSGSGLEGYRNLSSTGVAEIRKRTKSKDKVEFDESKAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQIFLGASKDSGGWGNGIFVPLLFAILAGCKLFVSLGKVALEKSASRSLDRQLSLLFGVCGFLFGLLTCSAFSPLILDFDLGEMGGMGACFVAILMGCFAGFLFIPATKVARSFWLGTDQIRCNLDMVYCGWFSRMILYGSQVAMFFTTLLWVNPLAEIFINKNIGESAIEHMSGEIRNADRLVGNIGFSKADFAKLRLWCLSLSGFLQIISVRQNLQMYLNEALLSWYQRLHAGKVPDLDFSRAKVFLHNHYLCVAVLQFFAPPALVLLFIGLSQIGVNSLENTSLSIAKTTPTAADSQRSVPTPFLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKHFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLVTSVPFTASNAVLVTTVCAPATPSAQLLTLTGSSSGEEQVISSNVTPTKDLADLIDENDRLRKEKVRLTEQLVEVKSLCNNIFSLMSSFVENQFKSSFKVRESVLTSAKSLDLFPVKRSSAEDETAEAAEAETEQIGAAIGTKRPREYREGPEAAEDDTTLRLQPPDRSEVESEQINCQNKVDNQKTWHNQVY 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2272734 2278557 + Tan0002235.1 Tan01g0269 737693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0269 726 PANTHER RE42071P 8 430 IPR019395 -
Tan01g0269 726 PRINTS Heat shock factor (HSF) domain signature 442 465 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0269 726 PRINTS Heat shock factor (HSF) domain signature 480 492 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0269 726 PRINTS Heat shock factor (HSF) domain signature 493 505 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0269 726 Coils Coil 584 611 - -
Tan01g0269 726 ProSitePatterns HSF-type DNA-binding domain signature. 481 505 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0269 726 Pfam Predicted transmembrane protein 161AB 226 424 IPR019395 -
Tan01g0269 726 Pfam HSF-type DNA-binding 442 531 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0269 726 SMART hsfneu3 438 531 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g0269 726 FunFam Heat stress transcription factor B-4 434 532 - -
Tan01g0269 726 SUPERFAMILY Winged helix DNA-binding domain 439 531 IPR036390 -
Tan01g0269 726 Gene3D - 434 532 IPR036388 -
Tan01g0269 726 MobiDBLite consensus disorder prediction 671 726 - -
Tan01g0269 726 MobiDBLite consensus disorder prediction 676 702 - -
Tan01g0269 726 MobiDBLite consensus disorder prediction 703 726 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0269 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0269 Tan-Chr1:2272734 Tan07g1695 Tan-Chr7:68285934 1.10E-58 dispersed
Tan01g0269 Tan-Chr1:2272734 Tan07g1694 Tan-Chr7:68285934 1.10E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26256 PF10268 Tmemb_161AB 2.00E-14 No_clan Tan TF