Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0270 ATGGGTATGGAGTTCAAACGCCTCTTTCTCATTTTCATCTTCGTCTTCGAGCTCTGCATTTTTAGCTCCAATGGCGTTAAAGACAAGAATGAGATTATTATCGAGAGAGAAAGCTTGCTTTCTTTCAAAGCTTCGCTAGAGACCTCAAAAATTTTGCCATGGAACTCATCGGTTCCTCACTGCTTTTGGGCCGGAGTTTCTTGCCGACTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCGTTCGCTCAAAGGCCAACTCTCTCCTTCCCTTTTCAACATTTCGAGTCTCTCTGTTCTTGACCTTTCAAACAATTACCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCAGAGCTTGAAGATGCTCGCTCTCGGCCAAAATCAGTTTTCCGGCCACTTCCCTATCGAACTCACGGAGTTGACTCAGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGCTTGGGAATTTGAAGCTGCTACGGACCCTTGACCTCTCCGGCAATGCCTTCGTCGGAAATGTCCCGGCCCACATCGGAAACTTGACGAGGATTTTATCGTTGGACCTTGGCAACAATCTTTTATCAGGTTCACTCCCATTGACCATCTTTACTGAGCTTAAATCTTTAACTTCTTTGGACATTTCAAACAACTCGTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTGGAGCATTTGACTGCCCTTTATATCGGCATTAACCACTTTTCCGGCGAGTTGCCGCCTGAAGTTGGTAAACTTGTGTTGCTTGAGAACTTTTTCTCGCCTTCTTGTTCTCTATCTGGTCCATTGCCTGAAGAACTATCCAAGTTGAAATCATTGAGCAAACTGGACCTTTCATACAACCCTCTTGGGTGTTCTATCCCGAAATCGATTGGTGAGTTGCAGAACTTGACTATTTTGAATCTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAACTTGGGAACTGCAGAAATTTGAAGACATTGATGCTTTCATTCAACTTTCTATCTGGGGTGTTGCCACAAGAGCTTTCAGAGCTTCCCATGTTGACATTTTCTGCTGAGAAGAATCAGCTTTCTGGGTCATTACCTTCCTGGCTTGGCAAATGGGATCTTGTCGATTCTATTTTACTCTCAAGTAATCGGTTTATCGGGGAAATCCCACCTGAGATTGGAAATTGTTCGATGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAGGAAATTTGTAATGCTGTATCCTTGATGGAGATTGATCTTGACAGTAATTTTCTTTCTGGTACGATTGACGACACATTTGTGCTGTGTAGAAACCTTACGCAGTTAGTTTTGGTAGACAATCAGATTGTTGGTACAATACCAGAGTACTTCTCAGACCTTCCCCTACTGGTAATCAACCTCGACTCTAACAATTTTACCGGTTTGTTACCGAGAAGTATATGGAACTCGGTGAATTTGATGGAATTTTCTGCTGCAAATAACCGGCTGGAGGGTCATCTCCCTTCAGAAATTGGTTATGCAGTTTTACTTCAGAGGCTTGTTCTCAGCAACAATAGGTTGACAGGCACAATACCAGATGAGATTGGAAATCTCACAGTGCTTTCTGTTCTAAACTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGCACTTACCACATTGGACCTCGGAAACAACAGTCTAAACGGGTCGATACCGGAAAGACTTGCAGACCTTGCTGAATTACAGTGCCTTGTTCTTTCACACAACAAGTTGTCTGGGGCAATACCTTCCAAACCGTCTGCTTATTTTCAACAGGTGACCATTCCTGATTTGAGTTTTGTTCAGCATCATGGTGTTTTTGATCTGTCTTATAACAGATTGTCTGGTACCATACCTGATGAACTGGGGAAGTGTGTTGTAGTGGTGGATCTTTTACTGAACAATAATCTACTTTCTGGAGAAATTCCCAGATCTCTCTCTCACCTATCAAACCTGACAACCTTGGATTTGTCTGGCAATATGCTTACTGGTCCTATTCCCGCAGAGATCGATGATGCTCTCAAGCTCCAGGGCCTGTATCTTGGGAATAATCACCTCACGGGAACGATCCCCGAAAGCTTGAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATCAGTTATCTGGTTCGGTTCCGAAAACTCTTGGTGATCTGAAAGCATTAACTCATTTAGATTTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAGCATGTTGAATCTTGTGGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTTCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACAATTTCGAGGGCGTACTTCCACGAACATTAGGCAACCTTTCATACTTGACAACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAGTACTTTGATGTTTCAAATAACAGGCTCTCAGGAGAGATTCCAGAGAAAATATGCAGCCTGATCAATATGTTTTACCTGAATTTGGCAGAAAACAGTCTGGAAGGGCCGATTCCGAGAAGTGGCATTTGCCTGAATCTATCCAAAAGTTCACTTGTCGGTAACAAGGACCTTTGTGGGAGAATCATAGGTTTCAATTGCCAGATCAAAAACTTAGAGAGATCTGCAGTCCTGAATGCTTGGAGCATTGCTGGGATTATCATTGTAAGTATTCTTATCGTTTTAACTGTGGCATTTGCCATGCGAAGACGGATTATTAGAAGCCACAGAGATACTGATCCAGAAGAAATGGAGGAAAGCAAATTAAACAGTTTCATTGACCCCAATCTCTATTTCTTAAGCAGCAGTCGATCGAAAGAGCCTTTAAGCATCAATGTGGCCATGTTCGAGCAGCCCCTTCTGAGATTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGAGGATTCGGGACTGTGTACAAGGCTACTTTGCCTGATGGAAAAATTGTTGCTGTGAAGAAGCTAAGCGAAGCAAAAACGCAGGGGCACAGAGAATTTATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACAATAATCTTGTTCCACTGCTTGGCTACTGCTCTCTTGGGGAGGAGAAACTCCTTGTCTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGAGAAACCGAACCAGTACTCTTGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGTGCAGCCCGTGGATTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAAGCAAGCAATATACTCCTCAATGAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCAAGACTGATCAGTGCTTGTGAGACTCATGTCACAACTGAGATTGCTGGAACCTTTGGTTACATCCCACCAGAGTATGGGCAGAGCGGGAGGTCGACTACGAAAGGAGACGTTTATAGCTTCGGTGTGATTCTGCTGGAGCTGGTAACTGGGAAGGAACCAACTGGACCTGACTTCAAAGAGATTGAGGGTGGAAATCTGGTTGGTTGGGTGCTTCAGAAGATCAAGAAGGGTCAGGCTGCAGACGTTCTCGACGCGACGGTTCTGAATGCTGATTCGAAGCATATGATGCTTCAAACACTTCAGATTGCTTGTGTTTGCCTGTCTGAAAATCCAGCTAACAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3903 43.04 MGMEFKRLFLIFIFVFELCIFSSNGVKDKNEIIIERESLLSFKASLETSKILPWNSSVPHCFWAGVSCRLGRVTELSLSSRSLKGQLSPSLFNISSLSVLDLSNNYLYGSIPPQISNLQSLKMLALGQNQFSGHFPIELTELTQLENLKLGTNLFTGKIPPELGNLKLLRTLDLSGNAFVGNVPAHIGNLTRILSLDLGNNLLSGSLPLTIFTELKSLTSLDISNNSFSGSIPPEIGNLEHLTALYIGINHFSGELPPEVGKLVLLENFFSPSCSLSGPLPEELSKLKSLSKLDLSYNPLGCSIPKSIGELQNLTILNLVYTELNGSIPAELGNCRNLKTLMLSFNFLSGVLPQELSELPMLTFSAEKNQLSGSLPSWLGKWDLVDSILLSSNRFIGEIPPEIGNCSMLNHLSLSNNLLTGPIPKEICNAVSLMEIDLDSNFLSGTIDDTFVLCRNLTQLVLVDNQIVGTIPEYFSDLPLLVINLDSNNFTGLLPRSIWNSVNLMEFSAANNRLEGHLPSEIGYAVLLQRLVLSNNRLTGTIPDEIGNLTVLSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLNGSIPERLADLAELQCLVLSHNKLSGAIPSKPSAYFQQVTIPDLSFVQHHGVFDLSYNRLSGTIPDELGKCVVVVDLLLNNNLLSGEIPRSLSHLSNLTTLDLSGNMLTGPIPAEIDDALKLQGLYLGNNHLTGTIPESLSHLSSLVKLNLTGNQLSGSVPKTLGDLKALTHLDLSSNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLSNNNFEGVLPRTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYFDVSNNRLSGEIPEKICSLINMFYLNLAENSLEGPIPRSGICLNLSKSSLVGNKDLCGRIIGFNCQIKNLERSAVLNAWSIAGIIIVSILIVLTVAFAMRRRIIRSHRDTDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLRLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSEAKTQGHREFIAEMETIGKVKHNNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTSTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVLQKIKKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2279391 2283293 - Tan0010768.1 Tan01g0270 737694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0270 1300 SMART LRR_sd22_2 94 120 - -
Tan01g0270 1300 SMART LRR_sd22_2 851 877 - -
Tan01g0270 1300 SMART LRR_sd22_2 573 599 - -
Tan01g0270 1300 SMART LRR_sd22_2 753 782 - -
Tan01g0270 1300 SMART LRR_sd22_2 705 728 - -
Tan01g0270 1300 SMART LRR_sd22_2 215 241 - -
Tan01g0270 1300 SMART LRR_sd22_2 681 704 - -
Tan01g0270 1300 SMART LRR_sd22_2 287 313 - -
Tan01g0270 1300 Gene3D Ribonuclease Inhibitor 213 447 IPR032675 -
Tan01g0270 1300 Gene3D Ribonuclease Inhibitor 624 924 IPR032675 -
Tan01g0270 1300 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 756 777 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 683 702 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 528 549 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 409 429 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 337 359 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 639 657 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 731 753 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine Rich Repeat 707 729 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 SUPERFAMILY L domain-like 630 914 - -
Tan01g0270 1300 Pfam Leucine rich repeat 552 610 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Pfam Leucine rich repeat 806 864 IPR001611 GO:0005515(InterPro)
Tan01g0270 1300 Gene3D Transferase(Phosphotransferase) domain 1 1098 1299 - -
Tan01g0270 1300 Gene3D Phosphorylase Kinase; domain 1 985 1097 - -
Tan01g0270 1300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0270 1300 FunFam leucine-rich repeat receptor protein kinase EMS1 213 362 - -
Tan01g0270 1300 FunFam serine/threonine-protein kinase BRI1-like 2 984 1097 - -
Tan01g0270 1300 SUPERFAMILY L domain-like 370 618 - -
Tan01g0270 1300 Gene3D Ribonuclease Inhibitor 34 140 IPR032675 -
Tan01g0270 1300 ProSiteProfiles Protein kinase domain profile. 1022 1300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0270 1300 Gene3D Ribonuclease Inhibitor 141 212 IPR032675 -
Tan01g0270 1300 FunFam Leucine-rich repeat family protein 34 186 - -
Tan01g0270 1300 FunFam serine/threonine-protein kinase BRI1-like 2 1098 1300 - -
Tan01g0270 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 683 1298 IPR051564 GO:0016020(PANTHER)
Tan01g0270 1300 SUPERFAMILY L domain-like 53 363 - -
Tan01g0270 1300 SUPERFAMILY Protein kinase-like (PK-like) 1002 1294 IPR011009 -
Tan01g0270 1300 FunFam Uncharacterized protein 363 627 - -
Tan01g0270 1300 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 629 925 - -
Tan01g0270 1300 Pfam Protein tyrosine and serine/threonine kinase 1026 1293 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g0270 1300 SMART LRR_typ_2 190 214 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 287 311 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 142 166 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 729 752 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 94 118 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 805 826 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 597 623 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 753 777 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 549 573 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 827 851 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 215 239 IPR003591 -
Tan01g0270 1300 SMART LRR_typ_2 681 705 IPR003591 -
Tan01g0270 1300 SMART serkin_6 1022 1294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g0270 1300 Gene3D Ribonuclease Inhibitor 453 623 IPR032675 -
Tan01g0270 1300 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Tan01g0270 1300 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0270 Tan-Chr1:2279391 Tan03g1376 Tan-Chr3:70266695 3.60E-92 dispersed
Tan01g0270 Tan-Chr1:2279391 Tan04g1751 Tan-Chr4:46525028 4.30E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66985 PF07714 PK_Tyr_Ser-Thr 6.40E-46 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0270 - - - 0.0