Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0273 ATGCCTAGTGGTGCAATTGCTAACCCGAGCTTTCTGGCTTTCTCAATTCCCAGTTCAATGCCTAGCTCCTCTGAATTCTCCAGTTCCATAAGGAAAATGGATGGTTATGGAGAAGTGTGTCTGCTTGGAGACAGCTTTGATCCGAGTGGAGTTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATTGATGGAGCCGTATCTGGGGATGATCAAGATGCTAACGACGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGTCCTCATCCAGATGATAAACAAAGGAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGACGAACACAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGGGCAGAGAATAGTGTGATGAAGGATGCTATTTCGAACCCAACGTGCAATACGTGCGGTGGCCCTTCAATTCCTGTTCATCTATCATTTGAAGAACACCAGCTTAGGATTGAAAATGCTAGATTAAGGGATGAACTGCACCGATTATATACCGTCACCAACAAGTTCTTGGGCTGGCCAGTTCTGCCCTTTGTCAATCATGGCTCTTCACCGAGTTCTGACTCATGCTTGGAACTTTCTGTTGGAAGAAATGGAATTGGAAGCTTGAGTACCATTTCTGATTCTATGGGGCTTAACTTGGGAAACGGACTTTTCAGTGGTGGCCCTCTGATGCCTATTAGTAAGTCTGAAATGGGCATGCCAGGCAATGATATACCAATTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCTATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAAGCCAGGATGGCGGTGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGATATTTCCTACTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCTACCAGAGATACTACGATGGTCATCATCAACAGCTTGGCACTTGTCGAGACGTTGCTGGATGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTAGGGCTACCACAATCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTTCGAGTACTTTCCCCGCTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCAGTCGGAGAAGGTTCCAATTCAAACCCGTTTTTCAGTTGCAGGAGGCTTCCTTCAGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATACACCAACTTTATCGCCAGATAATTAGTTCAGGCATCGGCTTCGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCTACAGAAAATCCTGCAGGAATATCGCCACACGGTAGGAGAAGTCTGTTGAAACTGTCCCAGCGTATGGTCGATAACTTCTGTTCTGGGGTTTGTACTTCGACTTTGCATAAGTGGGACAAGCTTGTTGTTGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGATCCTGGCGAGACACCGGGTATCGTGTTGAGTGCTGCAACTTCTGTTTGGATGCCAGTAACTCAGCAGAGATTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGTGAGTGGGACATTTTATCCAACTCCAGGCCAATGATAGAGATGCTTCACATCTCGAAAGGCCAGGGACCGGATAACCGAGTTTCTCTCCTACGTGCTAATCCCATGAATGCCAATGAGAACACCATGCTTATATTGCAAGAGACTTGGACTGATATATCAGGCTCACTGGTTGTTTATGCTCCAGTCGACACAACCTCGGTCAATTTGGTGATGCGTGGAGGAGATTCTGCTTATGTTTCGCTACTACCTTCAGGATTCGCCATTCTCCCTGATGGTCCATCCAACTATGCTTATACTAGCAACGATAAAGACGCTTCGATCAAGTCAGACATTAACAGTGGCTATGCTGGTGGATGCCTGCTCACAGTTGCATTCCAAATTTTGGTGAATAGCCTTCCAACAGCCAAACTCACCGTTGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACCGCCCTTCAAGTATCGTAA 2355 45.1 MPSGAIANPSFLAFSIPSSMPSSSEFSSSIRKMDGYGEVCLLGDSFDPSGVVRMREDEYDSRSGSDNIDGAVSGDDQDANDEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYTVTNKFLGWPVLPFVNHGSSPSSDSCLELSVGRNGIGSLSTISDSMGLNLGNGLFSGGPLMPISKSEMGMPGNDIPIERTIYVDLALAAMNELVKMAQMDGPLWIRSQDGGGKETLNLDEYSRIFPTSAGMKHSNWTTEATRDTTMVIINSLALVETLLDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSVGEGSNSNPFFSCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQIISSGIGFGSQRWLATLQRQCDCLAILMSSTIPTENPAGISPHGRRSLLKLSQRMVDNFCSGVCTSTLHKWDKLVVGNISEDVKVMARKSINDPGETPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMIEMLHISKGQGPDNRVSLLRANPMNANENTMLILQETWTDISGSLVVYAPVDTTSVNLVMRGGDSAYVSLLPSGFAILPDGPSNYAYTSNDKDASIKSDINSGYAGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQVS 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2316276 2321141 - Tan0009227.1 Tan01g0273 737697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0273 784 SMART START_1 294 516 IPR002913 GO:0008289(InterPro)
Tan01g0273 784 SUPERFAMILY Bet v1-like 286 516 - -
Tan01g0273 784 Coils Coil 138 170 - -
Tan01g0273 784 ProSiteProfiles START domain profile. 285 519 IPR002913 GO:0008289(InterPro)
Tan01g0273 784 SUPERFAMILY Bet v1-like 545 778 - -
Tan01g0273 784 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Tan01g0273 784 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Tan01g0273 784 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 782 IPR042160 -
Tan01g0273 784 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Tan01g0273 784 CDD START_ArGLABRA2_like 294 514 - -
Tan01g0273 784 MobiDBLite consensus disorder prediction 50 64 - -
Tan01g0273 784 Pfam START domain 295 515 IPR002913 GO:0008289(InterPro)
Tan01g0273 784 Gene3D - 73 160 - -
Tan01g0273 784 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Tan01g0273 784 MobiDBLite consensus disorder prediction 44 94 - -
Tan01g0273 784 FunFam Homeobox-leucine zipper protein GLABRA 2 294 515 - -
Tan01g0273 784 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Tan01g0273 784 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan01g0273 784 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0273 Tan-Chr1:2316276 Tan06g2109 Tan-Chr6:69929122 3.30E-266 dispersed
Tan01g0273 Tan-Chr1:2316276 Tan02g0328 Tan-Chr2:2703797 7.30E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26257 PF01852 START 2.10E-47 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0273 K09338 - csv:101218216 1405.96