Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0287 ATGGCATCTTCTCGTCTGGCTGGAGGATTAGCACAGTCTTCATCGAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCTTCTGCTATTGTTAATTCTCACTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAGGAACTGGATGTTCCGATTTTGGTCCAGTTTCCGGAGATATGAATAATGCTGTTTTAAATAGTGTGGCAAATTCAGGGCCCAGTGTGGGTGCAAGTTCATTGGTTACAGATGCGAACTCTGCCCTTTCAGGGGGGGCACATTTGCAAAGGAGTGCAAGCATCAATACGGAGTCATACATGCGCTTGCCTGCATCGCCTATGTCATTCAATTCAAATAATATTAGCGTGTCAGGTTCCTCTGTTATAGATGGATCCTGCGTAGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACACGTTCAGCAAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGTATCACTTCCCATGGGTGCAAAACTTCAGGGATCTTTCATTCCAGATCCAAATAATTATTCTCAGGTGCAGAAGAAACCACGACTGGATTTAAAGCAGGAAGATGTGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAATCGTAACTCACAGTTACAAGCTTTATTTCAACAACAAAGAATGCGACAACAGCAGCAGATTTTGCAGTCTCTACCTCAGTACAGAGCTCAGTTTCAGCAGCAGCAACAGATACAGTTGAGGCAGCAATTGCAACAACAGCAAGCAATGCAGCCAGCATCACCCATGAAGCGCCCATATGATGGGGGTGTTTGTGCTCGTCGGCTGATGCAATATCTATATCATCAGCGGCAAAGGCCTCCAGAGAATAGTATAGCCTACTGGAGAAAGTTTGTAACAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGCCACCACGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCGTGGCAGTGCGACATCTGCGGTTCCAAATCAGGAAGGGGCTTTGAGGCTACGTTTGAAGTACTCCCAAGACTCAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCTGAAGAAAGGAGATTTCCTTCTGGAATTATGATGTTAGAATATGGGAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTATCATATTCACACAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCGTCATGAAGAACTTCTTCCACGTAGGTTGGTTGCACCTCAGGTGAATCAGCTGTTACAGGTTGCCCAGAAATGCCAAAGCACAATTGCTGAAAGTGGTCCTGATGGTGTCTCTCAGAAAGATTTGCAGACAAATAGCAATATGGTTCTGACAGCTGGTCGTCAGCTTGCTAAGAGTCTGGAATTGCAGCTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTGAGGTGTTTGCAGATATCAGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGAGACCAAAAAGTTGGGCCCATTGAGGGCTTGAAAAATTATCCAAGACATGCCACTGCAGCGAAGCTCCAGATGCAAAAAATGCAGGAGATGGAGCAGTTAGCAAGTATCCAAGGTCTTCCCACAGACCGCAACACAATTAATAAGCTGATGGCAATGCATCCTGAACTCGATAACCATGGGATTAACAACCATCAGATGATTGGTCGAGGAGGTATGAGTGGTTCACAAGCCGCGTTGGCACTGACAACATACCACCAGAATATCCTCATGAGACAAAACTCTATGAATTCCAACCCTAGCCCACACCAACAGGAGGCCTCATCTTCTTTCACTAATTCCAACTATAATCCATCCCTTACACTCCAGGGGACTGCATCCTTGATGCCTGGATCCATACAGAACTCATCTGTCGGTGGCTTTTCAAGCGTCCAGCAACCCTTGCAAAAGCAATCGCAGCAGCTGCAACAGCATCCACCAAATGCCGGCTCCATGGTCCAACAAAGTCATCCTCAGACGATTCAAAGTAGCCAGGCCATACAACAACAGATGATCCAACAACTACTGCAGATGTCAAGTAACAGTAAGAGTGGCGGTGCACAACAGCAACCCCTTACCGGACCAAATGCAAATGCAAATAGAAGCTTGGGAAGAAGGGGTATGGGTTTTGTGGGCAACCCCTCAGTTGCAGCTGTGGCATCTGGAAATCTGTCTGGGAGCAATGCCCCTGGCCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCTGCTGGTAACAGTGGATTCAATCAAAAGGCTTCTGATTTGCCGCAAGATCTTCATCTTCCAGAAGGTCTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAATGGGTTTATTAACAATGACCTTGATGAGGATTTGGGTTATGTCTGGAAGGCTTGA 2544 45.44 MASSRLAGGLAQSSSSSGIFYQGEGQSSAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGAHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHVQQGASHATSLPTSQIGQVSLPMGAKLQGSFIPDPNNYSQVQKKPRLDLKQEDVLQQQVLQQLFQRQDSMQSQNRNSQLQALFQQQRMRQQQQILQSLPQYRAQFQQQQQIQLRQQLQQQQAMQPASPMKRPYDGGVCARRLMQYLYHQRQRPPENSIAYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPEERRFPSGIMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLLQVAQKCQSTIAESGPDGVSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMAMHPELDNHGINNHQMIGRGGMSGSQAALALTTYHQNILMRQNSMNSNPSPHQQEASSSFTNSNYNPSLTLQGTASLMPGSIQNSSVGGFSSVQQPLQKQSQQLQQHPPNAGSMVQQSHPQTIQSSQAIQQQMIQQLLQMSSNSKSGGAQQQPLTGPNANANRSLGRRGMGFVGNPSVAAVASGNLSGSNAPGPSRSNSFKAASNSESSAGNSGFNQKASDLPQDLHLPEGLVEDIGQDFPENGFINNDLDEDLGYVWKA 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2409846 2417166 - Tan0021988.2 Tan01g0287 737711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0287 847 MobiDBLite consensus disorder prediction 629 749 - -
Tan01g0287 847 MobiDBLite consensus disorder prediction 772 811 - -
Tan01g0287 847 PANTHER LIM DOMAIN-BINDING PROTEIN 15 836 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Tan01g0287 847 MobiDBLite consensus disorder prediction 629 758 - -
Tan01g0287 847 MobiDBLite consensus disorder prediction 772 807 - -
Tan01g0287 847 Pfam LIM-domain binding protein 288 548 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0287 Tan-Chr1:2409846 Tan07g0291 Tan-Chr7:5937509 4.60E-290 dispersed
Tan01g0286 Tan-Chr1:2409846 Tan01g0287 Tan-Chr1:2409846 0.00E+00 tandem
Tan01g0287 Tan-Chr1:2409846 Tan01g0288 Tan-Chr1:2409846 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0287 - - - 0.0