Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0295 ATGCTACTACTGCTGCTGATTCTTAATTTTTTCATGTCTGACCATACTCAACAACAACAACAACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCCGTCCGCCACCCCAATTTCCGCGGTATCCGCAGCCGAAGCGGCAAATGGGTCTCTGAAATTCGCGAGCCTCGTAAGACCACTCGCATTTGGCTCGGTACCTACCCGACCCCTGAAATGGCCGCTGCCGCATACGATGTCGCTGCCCTCGCTCTCAAGGGTCCCGATGCTTCCCTTAATTTCCCTCACTCTCTTCTATCCTATCACATTCCCTCTTCCACTTCCCCTTCTGATATTCGCGCCGCCGCTGCTCTTGCCGCCTCTTCAAGACGCCCACCCCTCGACGTTCCAGCTGATCCCTCCGCCCCCCCGCCTTCCTTCGTCGACGAGGAGGAGTTACTCAACATGCCCAATTTACTCGTCGACATGGCCGAGGGAATGCTCCTCACTCCCCCCCGTATGAACTCCCCCTCTTCCGATCATTCTCCCACCAACTCTCAAGAGGATGGATTATGGAGTTACTCCTAA 561 54.19 MLLLLLILNFFMSDHTQQQQQPSSSSSSSSSPVRHPNFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFPHSLLSYHIPSSTSPSDIRAAAALAASSRRPPLDVPADPSAPPPSFVDEEELLNMPNLLVDMAEGMLLTPPRMNSPSSDHSPTNSQEDGLWSYS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2506650 2507872 + Tan0013916.1 Tan01g0295 737719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0295 186 ProSiteProfiles AP2/ERF domain profile. 37 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 Pfam AP2 domain 36 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 MobiDBLite consensus disorder prediction 163 186 - -
Tan01g0295 186 SMART rav1_2 37 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 MobiDBLite consensus disorder prediction 17 40 - -
Tan01g0295 186 CDD AP2 36 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 29 185 IPR045277 GO:0003700(InterPro)
Tan01g0295 186 FunFam Ethylene-responsive transcription factor 2 37 94 - -
Tan01g0295 186 MobiDBLite consensus disorder prediction 115 137 - -
Tan01g0295 186 MobiDBLite consensus disorder prediction 17 36 - -
Tan01g0295 186 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0295 186 MobiDBLite consensus disorder prediction 158 186 - -
Tan01g0295 186 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0295 Tan-Chr1:2506650 Tan01g1917 Tan-Chr1:20650398 2.80E-46 dispersed
Tan01g0295 Tan-Chr1:2506650 Tan01g0296 Tan-Chr1:2531412 1.40E-26 tandem
Tan07g0294 Tan-Chr7:6023525 Tan01g0295 Tan-Chr1:2506650 2.20E-33 transposed
Tan01g0295 Tan-Chr1:2506650 Tan07g1704 Tan-Chr7:68393095 5.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26259 PF00847 AP2 8.30E-11 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0295 - - - 0.0