Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0296 ATGGATACTTTTTCAAGTTTTTATGAAGAGTTGTCGAGTTCTGAGAGTAGTAATTGCTGGCGGGCCATTTTTTCCGATGAGGATGTTATGTTGGCGGCGAGCAATCCGAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTTTACAGAGGAGTCAGACGAAGGAATTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAAAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCGGCGATGGCGCTTAGGGGTCGCTCTGCTTGTCTCAATTTTGCCGATTCGGCCTGGCGCCTGCCGGTGCCAGCGTCTGCTGACGCCAGGGATATTCAAAAGGCGGCGGCGGCGGCGGCGGAGGCATTCCGGCCAGTAGAATCAGATGGGTCTTCCGTTGATGATTCAAGGCTGGAAAACGGGATGACGCCGGAGACGGCGGTGGGGACGCCGGAAAACGTGTTTTACATGGATGAGGAGGCAGTTTTTGGGCTGCCGGGATTGTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 642 53.43 MDTFSSFYEELSSSESSNCWRAIFSDEDVMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPVPASADARDIQKAAAAAAEAFRPVESDGSSVDDSRLENGMTPETAVGTPENVFYMDEEAVFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2531412 2532377 + Tan0011683.1 Tan01g0296 737720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0296 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 213 IPR045277 GO:0003700(InterPro)
Tan01g0296 213 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0296 213 MobiDBLite consensus disorder prediction 140 159 - -
Tan01g0296 213 CDD AP2 53 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0296 213 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0296 213 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677(InterPro)
Tan01g0296 213 Pfam AP2 domain 51 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0296 213 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Tan01g0296 213 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0296 213 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g0296 213 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0296 Tan-Chr1:2531412 Tan07g0294 Tan-Chr7:6023525 7.30E-67 dispersed
Tan01g0295 Tan-Chr1:2506650 Tan01g0296 Tan-Chr1:2531412 1.40E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26260 PF00847 AP2 1.10E-15 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0296 - - - 0.0