Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g0311 | ATGGTGAGAGGAAAAGTAGAAATGAAACGGATAGAAAATGCAACAAGTCGACAGGTAACGTTCTCAAAGCGACGAAATGGACTATTGAAGAAGGCCTATGAACTGTCTGTGCTGTGTGATGCTGAAGTTGCAGTTATCATTTTCTCTCAAAAAGGCCGTCTCTATGAGTTTGCAAGCTCTGACATGCCTAGGATTGTAGAGCGCTATCGGAAATGTGAAAAAGAAGGGAGGAACAATACCAAATTTGATAGACAACTCCAATTACAGCATTTAAGGCATGAAGCTGACAGCATTACTGAAAAGATCGAATTGCTGCAACTTTCTCAACGTAAGATGTTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCATGTACTTGATGCTCAGCTTCAGCGAAGCTTGTTCCTAATTAGGGCCAGAAGGGCTCAGCTATACAAGGAACAGATACGACAACTAGAAGAAAAGGAAAGACACCTTCAAGAAGAGAACAGGAAATTAACTTTAAAGGCAGCTGCTAACGGTGGCGCCACCGCACCCGGCTGCCGGAGGAGCTCAAGTTGGGAAGTCGACACCCAATTATCCATTTGA | 594 | 43.6 | MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSDMPRIVERYRKCEKEGRNNTKFDRQLQLQHLRHEADSITEKIELLQLSQRKMLGYGLDSCSLDELHVLDAQLQRSLFLIRARRAQLYKEQIRQLEEKERHLQEENRKLTLKAAANGGATAPGCRRSSSWEVDTQLSI | 197 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2653098 | 2665894 | + | Tan0002507.1 | Tan01g0311 | 737735 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g0311 | 197 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 172 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Tan01g0311 | 197 | Pfam | K-box region | 85 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Tan01g0311 | 197 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | Coils | Coil | 88 | 108 | - | - | |
| Tan01g0311 | 197 | Coils | Coil | 144 | 171 | - | - | |
| Tan01g0311 | 197 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Tan01g0311 | 197 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
| Tan01g0311 | 197 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Tan01g0311 | 197 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Tan01g0311 | 197 | SUPERFAMILY | SRF-like | 3 | 87 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g0311 | Tan-Chr1:2653098 | Tan01g0313 | Tan-Chr1:2653098 | 4.10E-88 | dispersed | |
| Tan01g0311 | Tan-Chr1:2653098 | Tan01g0312 | Tan-Chr1:2653098 | 4.10E-104 | tandem | |
| Tan01g0311 | Tan-Chr1:2653098 | Tan07g1724 | Tan-Chr7:68595332 | 6.00E-39 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26262 | PF01486 | K-box | 4.90E-22 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g0311 | - | - | - | 0.0 |