Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0313 ATGGTGAGAGGAAAAGTAGAAATGAAACGGATAGAAAATGCAACAAGTCGACAGGTAACGTTCTCAAAGCGACGAAATGGACTATTGAAGAAGGCCTATGAACTGTCTGTGCTGTGTGATGCTGAAGTTGCAGTTATCATTTTCTCTCAAAAAGGCCGTCTCTATGAGTTTGCAAGCTCTGACATGCCTAGGATTGTAGAGCGCTATCGGAAATGTGAAAAAGAAGGGAGGAACAATACCAAATTTGATAGACAACTCCAATTACAGCATTTAAGGCATGAAGCTGACAGCATTACTGAAAAGATCGAATTGCTGCAACTTTCTCAACGTAAGATGTTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCATGTACTTGATGCTCAGCTTCAGCGAAGCTTGTTCCTAATTAGGGCCAGAAGGGCTCAGCTATACAAGGAACAGATACGACAACTAGAAGAAAAGGAAAGACACCTTCAAGAAGAGAACAGGAAATTAACTTTAAAGGTGAATAACTCTTTCAAGCTTTTGTGTGTGTGTGTGTGTGTTTTTACTGTGTTCGAACTGTTTTGTTTAAGTTTATGA 591 39.93 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSDMPRIVERYRKCEKEGRNNTKFDRQLQLQHLRHEADSITEKIELLQLSQRKMLGYGLDSCSLDELHVLDAQLQRSLFLIRARRAQLYKEQIRQLEEKERHLQEENRKLTLKVNNSFKLLCVCVCVFTVFELFCLSL 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2653098 2662194 + Tan0002507.3 Tan01g0313 737737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0313 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0313 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g0313 196 Coils Coil 88 108 - -
Tan01g0313 196 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Tan01g0313 196 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0313 196 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 Coils Coil 144 174 - -
Tan01g0313 196 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan01g0313 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0313 196 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0311 Tan-Chr1:2653098 Tan01g0313 Tan-Chr1:2653098 4.10E-88 dispersed
Tan01g0313 Tan-Chr1:2653098 Tan07g0249 Tan-Chr7:5370438 1.00E-51 dispersed
Tan01g0312 Tan-Chr1:2653098 Tan01g0313 Tan-Chr1:2653098 4.10E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26264 PF01486 K-box 3.90E-22 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0313 - - - 0.0