Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0317 ATGGGAAGGGGAAAAGTTGTGCTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGACCTTCTCAAAGCGCAGAAATGGGTTATTGAAGAAAGCCTATGAGCTTTCTGTGCTCTGTGATATTGACGTTGCTCTCATCATCTTCTCAAGTCGTGGCAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAAAGGTACCACCAGCGATGTTACAGCTCTGGATCAAGCAGCAACCTTGATGAGAATGACATACAGATGATCTACATCTTGAAGCAGATAGAGGAGGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCACATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCACAATCTTGAGAAACAGTTGGATAAAACTCTTTCACAAACCAGACAGCGGAAGGCTGAGATAATGCTTCAAAGATTAGCAGACTTGCGCAAAATGGAGCAGGACCTTGGAGATCAGAATACTCAGCTCAAGTCAAAGCTTGAAGAAGGACAACAATGTATGCAGCAAAACGAAGATGGCCAGGAAGATCCAAACAAACAACTACTGAATAATAATTATGAAGTTGTGGCAGATCCAAACATAAGCAGCAGGTACTTTGATGCTCAAGAAGAAGAAGAAGCCAGGGCCATGATGGGAGGGAGTAACTTAATCCCAGATTGGCTCTTATGA 717 42.68 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDIDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSSNLDENDIQMIYILKQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSQTRQRKAEIMLQRLADLRKMEQDLGDQNTQLKSKLEEGQQCMQQNEDGQEDPNKQLLNNNYEVVADPNISSRYFDAQEEEEARAMMGGSNLIPDWLL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2704902 2711204 - Tan0000667.2 Tan01g0317 737741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0317 238 MobiDBLite consensus disorder prediction 167 195 - -
Tan01g0317 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Tan01g0317 238 Gene3D - 13 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 Pfam K-box region 97 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0317 238 Coils Coil 158 178 - -
Tan01g0317 238 Coils Coil 126 146 - -
Tan01g0317 238 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 Coils Coil 92 112 - -
Tan01g0317 238 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan01g0317 238 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan01g0317 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan01g0317 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan01g0317 238 MobiDBLite consensus disorder prediction 165 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0317 Tan-Chr1:2704902 Tan06g2137 Tan-Chr6:70791271 1.50E-52 dispersed
Tan01g0316 Tan-Chr1:2704902 Tan01g0317 Tan-Chr1:2704902 3.90E-122 tandem
Tan01g0317 Tan-Chr1:2704902 Tan01g0318 Tan-Chr1:2704902 8.40E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26266 PF01486 K-box 3.80E-23 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0317 K09264 - csv:101212022 350.903