Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0325 ATGATTCCGATGACGGAGGCTTACTGTAGAATGCCAAGCGAAGATGATGGAGATTCGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGGCGATTAGCAACAGTACCGTCGGCGAATCCCTCGCCCTCGACCAGTCACCACCGCAAGGAGAGTCAAACTGAGAGTTCCGGTTTTGAGAAGAAGCGTGTTCGGAATACGGAAGGCGACGGTACTCCGGATATTCCATCGCCTTCGTCATCGGGGGAGGACGTGAAGACTCTAGTGGCTTCACCGTTGGTACCTCAGCCGGTGTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGACGCAGTAATGGTGAGCACATGCCTTCTTGGTCCAGAAAATTGCCGGCGGCGACCGGTACATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTAGTACAGGAGGAATTGGCGCGCGTGGTTGCTACGCGCGTGGAAACTGAGAGTGGCGGCGGAGGAAGCGGTGCGGCGGAGGAGATTAAGGTGGAGGAAGAGGAGACTTGGAGAAGAGTGATGCAGCAGAGCTTTGAGAGAATGGACGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGTGTCGGAGGCCAGTGTGGTTGCCATCCAATGGAGGTGGCTCTCGGCGGCTCCACCGCCGTCGTCGCCGTGCTCACGCCAGATCACATAATCGTAGCCAACTGCGGTGACTCACGCGCCGTCCTCTGCCGAAGAGAAAGGGCGATTCCGCTTTCGAATGATCACAAGCCGGATAGAATTGATGAACTGGCAAGGATTGAAGCAGCTGGAGGACGGGTGATTTTTGTAAATGGAGCTCGGGTTGAAGGCATCCTTGCAATGTCCCGTGCAATAGGCGACAAGTATCTCAAGTCAGTTGTAATATCAGAGCCAGAAATTACTTTCACCAGAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGTTTGTGGGATGTTCTTTCGAGTGAGTTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGAAGGAACGGCTGCTGCTTCTACTTCTACAATAGACGCTGCTTCTACTTCTACAATAGACCTCAATGCCATGCCTCAGATTGAAGAAGAAGGGGCTGGAACTTTATATGCATCTCGAAGTGCACTTGCTGCAGCACTGCTTACTCGTCTTGCTTTGGGGCGGAAAAGCACGGACAACATCAGTGTCATAGTTATTGATCTAAAGAGGAGCTAA 1296 52.93 MIPMTEAYCRMPSEDDGDSPAKCRERRRRRIEMRRLATVPSANPSPSTSHHRKESQTESSGFEKKRVRNTEGDGTPDIPSPSSSGEDVKTLVASPLVPQPVFGMMSVSGRSREMEDAVMVSTCLLGPENCRRRPVHFFAVYDGHGGPHVAALCREKMHVLVQEELARVVATRVETESGGGGSGAAEEIKVEEEETWRRVMQQSFERMDEVALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRRERAIPLSNDHKPDRIDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTRRESDDECLILASDGLWDVLSSELACEVARECLQEGTAAASTSTIDAASTSTIDLNAMPQIEEEGAGTLYASRSALAAALLTRLALGRKSTDNISVIVIDLKRS 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2867221 2875096 - Tan0018373.1 Tan01g0325 737749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0325 431 MobiDBLite consensus disorder prediction 11 26 - -
Tan01g0325 431 Pfam Protein phosphatase 2C 102 375 IPR001932 -
Tan01g0325 431 MobiDBLite consensus disorder prediction 51 72 - -
Tan01g0325 431 FunFam Protein phosphatase 2C 50 122 431 - -
Tan01g0325 431 Gene3D - 96 431 IPR036457 -
Tan01g0325 431 SUPERFAMILY PP2C-like 95 429 IPR036457 -
Tan01g0325 431 CDD PP2Cc 101 428 IPR001932 -
Tan01g0325 431 ProSiteProfiles PPM-type phosphatase domain profile. 101 428 IPR001932 -
Tan01g0325 431 SMART PP2C_4 91 426 IPR001932 -
Tan01g0325 431 PANTHER PROTEIN PHOSPHATASE 58 427 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g0325 431 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169(InterPro)
Tan01g0325 431 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0325 Tan-Chr1:2867221 Tan01g2399 Tan-Chr1:29510854 2.50E-74 dispersed
Tan09g1243 Tan-Chr9:64759072 Tan01g0325 Tan-Chr1:2867221 2.40E-10 dispersed
Tan01g0325 Tan-Chr1:2867221 Tan01g0326 Tan-Chr1:2867221 3.80E-171 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0325 K14497 - csv:101206634 655.21