Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0352 ATGGAGGAGAAAGAAATCGGAGTTTCTAGGTTTACAGTTACTAACAATGAAGCCCTAGAGAGCTTCCAGTCAGCTCCAAGAACAGAAACCCCAAAACCAACCGATGATCCTAAAGCGACGGAGCTCCCGGCGGCTACTACAACACCCGCGAGCTTCGCGACTGGTGCACCACCCGGGTTCGCGAAGGCAGCTGATAAACCACCGCCATGCGCGGCGGTTTCCAGTACGGAAACAAAGAAGAAGAGAGGAAGGCCGAGAAAGTACGGACCGGACGGGAAGCGGTCACTGACACTGGCGTTGTCTCCGATGCCGATATCCTCGTCAATTCCACTGACCGGAGAGTTTCCGAACTGGAAACGAGATAACGACATGTCGCTAGCGACAATCAAGAAGCCACAGAGATTCGAGTTCGAGAATCCCGGTCAGAGACTCGCATACTCTGTTGGTGCAAATTTTACTCCTCATGTAATCACTGTCAATGCTGGAGAGGACATTACGATGAAGGTTATGTCTTTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCGAATGGTACAATTTCAAATGTTACACTTCGACAGGCCACTTCTTCCGGTGGTACCTTAACATATGAGGGTCGTTTTGAAATACTTGCATTGACCGGGTCGTATATGCCCACACAGAACGGAGCTACAAAGAGCAGATGTGGTGGGATGAGTGTCTCGCTAGCGGGTCAAGATGGACGAGTCGTTGGTGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTCGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGTCCACAACTATTTTCTTTCCTCCCATCAACACCATCACTGGTGAAGAAATGAAGGCAATGTACACTGGTGGTATCAAGCCTATTCTCACGACACCGTCCTTTCAAGAACATAATCCACCATCGCCAAGCCCGATGACAGGCTTCAAAATCTCATCCACTGACAACTTACCTCTTTCTGAACAAGAACCCAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1077 48.93 MEEKEIGVSRFTVTNNEALESFQSAPRTETPKPTDDPKATELPAATTTPASFATGAPPGFAKAADKPPPCAAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNDMSLATIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPINTITGEEMKAMYTGGIKPILTTPSFQEHNPPSPSPMTGFKISSTDNLPLSEQEPKTQSQSNCEVSC 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3025882 3030827 + Tan0018460.2 Tan01g0352 737776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0352 358 ProSiteProfiles PPC domain profile profile. 149 293 IPR005175 -
Tan01g0352 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 273 - -
Tan01g0352 358 MobiDBLite consensus disorder prediction 9 30 - -
Tan01g0352 358 MobiDBLite consensus disorder prediction 1 96 - -
Tan01g0352 358 MobiDBLite consensus disorder prediction 312 358 - -
Tan01g0352 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Tan01g0352 358 CDD DUF296 153 267 IPR005175 -
Tan01g0352 358 Gene3D - 154 283 - -
Tan01g0352 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 318 IPR039605 GO:0003680(InterPro)
Tan01g0352 358 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0352 Tan-Chr1:3025882 Tan01g3426 Tan-Chr1:98340217 9.40E-83 dispersed
Tan01g0351 Tan-Chr1:3025882 Tan01g0352 Tan-Chr1:3025882 1.60E-191 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0352 - - - 0.0