Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0385 ATGGCTCCACAAAGCAAATTTTCATTTTTTTTCATAACCCTTTTGGCAATTCTTTCAAATGTATCTTCACAAACAAAATCCAGTAAAGGCAATGGCATTACCAGATGGTGCAAAACGACGCCGCATCCTGGAGTTTGCATTTTCTTCATGTCACCGATCAAATCCCCACCCGAAAACCGACCGGACTTTCGAAAATTGGCGATAAAAACCGCCATGGAAAAAGCCGCCGAGGCTCAATCTTACGCGGCCCGGTTCGGTCCGAGCTGCAAGACCACGCGCCAGAGAGCTGCGTGGGCCGACTGCTTGAAGCTCTATAACGACACCGTTTTTCAACTGAACCGCACCCTCCAATGCCTCGCCGGCAGAACCCGCCGGTGTACGGATTTCGATGCACAAACGTGGCTGAGTTCTTCGCTTACTAACATCGATATGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAACTCCGATCATATGTCAGAATGTTTCGAAGATGATTAGCAATTGTTTGGCGATTAATGGGAGGTTTTTAGAGAAAGGGGTTAAAATTGGAACAATGGGAGTGGAAAATCAAAATGGGTTTCCGAAATGGGTTTCGAATGGTGATCGGAAATTGTTGCAGTCGTCGAAGGTGAGGGCCAATTTGGTGGTGGCGAAAGATGGGTCTGGGAATTTCCGGTCAGTTCAGGCGGCGATCAACGCCGCCGCGAGGAGGCGGAGGAGGGGCCGATTTGTAATTTACGTAAAGCGAGGGGTTTATAGAGAGAATATTGAAGTTGGGACTGATAATGGGAACTTAATGCTGGTCGGAGATGGGATGAGATTTACTGTAATTACCAGTGGAAGGAGCGTCGCCGCCGGTTTCACCACCTTCAGTTCTGCAACCGCCGGTATCCAAGGTTCTGCCTTCATAGCACGAGACATAGCCTTTGTGAACACGGCAGGGCCTCGAATGGGCCAAGCTGTGGCACTCCGATCATCATCGGACCTATCAGTGTTCCATCGGTGCAGCTTTCAAGGCTACCAAGACACTTTAATGGTGCTCTCACAAAGACAATTCTACAAGCAATGTTACATCTATGGTACAATCGACTTCATCTTCGGCAATGCCGCAGTTGTTTTACAAAATTGCTTGATTTATGTACGAAGGCCCTTAAAAGGCCAAGTCAACGTCATCACGGCCCAAGGTCGAGAGGACCCATTTCAAAATAGTGGAATCTCGATCCATAACTCTCAAATACGGGCTGCTGCCGATTTGCAGCCCATTATTGGCTCGGTCAAAACATATTTAGGTCGACCCTGGAAGAAGTATTCACGAACCGTTATATTGAGGAGCTATATTGATAGCTTGGTCAGCCCAATGGGCTGGCTGGCATGGCAAAGTAGTAAATTTGCTCAAGATACGTTGTATTATGGGGAGTATAGGAATTTTGGGCCTAGGGCTTCAACCCGATATAGAGTTAGATGGCCCGGTTTCCATGTTATTAAAAGCCCAAATGTAGCCTCTAAGTTTACCGTTAAGAGACTCATCGCCGGCCAGACTTGGCTACCAGCTACTGGAGTTCCATTCAAGCTTGGCCTTTGA 1596 47.87 MAPQSKFSFFFITLLAILSNVSSQTKSSKGNGITRWCKTTPHPGVCIFFMSPIKSPPENRPDFRKLAIKTAMEKAAEAQSYAARFGPSCKTTRQRAAWADCLKLYNDTVFQLNRTLQCLAGRTRRCTDFDAQTWLSSSLTNIDMCLSGAADLNVTDFITPIICQNVSKMISNCLAINGRFLEKGVKIGTMGVENQNGFPKWVSNGDRKLLQSSKVRANLVVAKDGSGNFRSVQAAINAAARRRRRGRFVIYVKRGVYRENIEVGTDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGSAFIARDIAFVNTAGPRMGQAVALRSSSDLSVFHRCSFQGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLQPIIGSVKTYLGRPWKKYSRTVILRSYIDSLVSPMGWLAWQSSKFAQDTLYYGEYRNFGPRASTRYRVRWPGFHVIKSPNVASKFTVKRLIAGQTWLPATGVPFKLGL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3234724 3236442 + Tan0003556.1 Tan01g0385 737809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0385 531 PANTHER PECTINESTERASE 9 522 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan01g0385 531 NCBIfam pectinesterase inhibitor domain 7 177 IPR006501 GO:0004857(InterPro)
Tan01g0385 531 SUPERFAMILY Pectin lyase-like 215 530 IPR011050 -
Tan01g0385 531 SMART PMEI_2 28 176 IPR006501 GO:0004857(InterPro)
Tan01g0385 531 FunFam Pectinesterase 212 531 - -
Tan01g0385 531 Pfam Pectinesterase 218 516 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan01g0385 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Tan01g0385 531 Pfam Plant invertase/pectin methylesterase inhibitor 33 176 IPR006501 GO:0004857(InterPro)
Tan01g0385 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Tan01g0385 531 Gene3D - 212 531 IPR012334 -
Tan01g0385 531 CDD PMEI-like_3 36 180 - -
Tan01g0385 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0385 Tan-Chr1:3234724 Tan07g0203 Tan-Chr7:4599782 5.90E-158 dispersed
Tan01g0385 Tan-Chr1:3234724 Tan01g0386 Tan-Chr1:3242848 4.10E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0385 K01051 - csv:101213944 832.787