Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g0386 ATGGAGAAGAGTATTGGGGTGTTGTTTTTGCTTCAGTTCTTTTTACTATCTTCTTCAGCCTTTTCCAACCATGTCTCTAATGGCATTGATTGGTGGTGCAGAAAAACCACATACCCTGAAACCTGCAAGTATTTCTTCAGCCATGGCAGAAGGTCTCCTCCCAAAGATATGTCTGAGTTCAAGAAAATGGTGATCCAATTCGCCATGGAGAAAGCCTCGAGTGTTGAGAGCCATGCTAAGGGTGTCGGTTCGAAGTGCCGAAATGAGAAGGAAAGGGCTGCTTGGGCAGATTGCTTGAAGCTCTACCAAAACACCATCTTTCAGCTCAACCACACTCTAGATTCCTCTACTAAATGTACTGAATTTGATATCCAAACCTGGCTCAGTACCGCCCTAACCAACCTTGAGACATGTCGCACCGGGTTTGCTGAGCTTAATGTTTCGGACTATGTATTGCCGCTGATCACGTCGAACAATGTCACAAAGCTGATAAGCAACAGCTTGGCGGTTAACAATGCTTCAACTTGGCCGGGGAAAGAGACATATAAAAAAGGTTTTCCAAGTTGGCTTTCAGGTGGTGACAGGAAGCTCTTGCAGTCATCTTCAGTGAAGGCGGACCTTGTGGTGGCTCAGGACGGATCCGGTGACCATAAGACGGTTGCAGCAGCTCTAGAGGAAGCAGCAAAAAGGAAAACAGATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAACCTTGACATAGGAAATAAGATGAAGAATATAATGCTCGTCGGAGATGGAATGAGATTTACCTTCATTACTGGCAATAGAAGTGTAGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGAGAAGGATTTATGGCTCGAGGCATCACATTCCGTAACACCGCTGGTCCTGAAAACCATCAAGCAGTTGCTCTCCGATCAGGTGCAGATCTTTCGGTCTTCTATCGCTGTGCCTTTGAAGGGTATCAAGACACCCTCTATGTCCATTCACAAAGACAATTCTATAAGGAGTGTTATATTTACGGCACGGTAGATTTTATATTCGGCAATGCTGCAGTTGTTCTACAGAACTGCATGATTTACGCAAGAAGGCCAATGAATGGTCAGAAGAATGCAGTCACTGCTCAAGGACGGACTGATCCAAATCAAAATACTGGCATTTCAATTCACAACTCACGGGTCATGGCCACTGATGACCTGAAACCAGTGGAGAGCACGGTAAAAACCTACTTGGGAAGGCCGTGGAAGGAGTACTCTCGAACAGTTTTCATGAAAACTTACCTCGATAGTTTGGTTGACCCAGCAGGTTGGTTGGAGTGGAATGGTGACTTTGCATTGAATACTTTATACTATGGAGAGTATAAGAACATTGGTCCTGGTTCATCAACCAGCCAGAGAGTGAAGTGGAAAGGTTACCGAGTTATAAGCAATTCAACAGAGGCATCGGAGTTCACCGTCCAAAATTTCATTGCAGGGCAGTCATGGCTGCCAGGCACAGAGGTCCCATTCATTCCTGGACTCTAG 1557 45.41 MEKSIGVLFLLQFFLLSSSAFSNHVSNGIDWWCRKTTYPETCKYFFSHGRRSPPKDMSEFKKMVIQFAMEKASSVESHAKGVGSKCRNEKERAAWADCLKLYQNTIFQLNHTLDSSTKCTEFDIQTWLSTALTNLETCRTGFAELNVSDYVLPLITSNNVTKLISNSLAVNNASTWPGKETYKKGFPSWLSGGDRKLLQSSSVKADLVVAQDGSGDHKTVAAALEEAAKRKTDGRFVIQVKRGVYEENLDIGNKMKNIMLVGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFMARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYLDSLVDPAGWLEWNGDFALNTLYYGEYKNIGPGSSTSQRVKWKGYRVISNSTEASEFTVQNFIAGQSWLPGTEVPFIPGL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3242848 3244873 + Tan0012794.1 Tan01g0386 737810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g0386 518 NCBIfam pectinesterase inhibitor domain 1 172 IPR006501 GO:0004857(InterPro)
Tan01g0386 518 FunFam Pectinesterase 200 518 - -
Tan01g0386 518 Gene3D - 200 518 IPR012334 -
Tan01g0386 518 Pfam Pectinesterase 206 503 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan01g0386 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Tan01g0386 518 SUPERFAMILY Pectin lyase-like 202 517 IPR011050 -
Tan01g0386 518 PANTHER PECTINESTERASE 10 508 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan01g0386 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 173 IPR035513 -
Tan01g0386 518 CDD PMEI-like_3 31 173 - -
Tan01g0386 518 SMART PMEI_2 24 170 IPR006501 GO:0004857(InterPro)
Tan01g0386 518 Pfam Plant invertase/pectin methylesterase inhibitor 29 170 IPR006501 GO:0004857(InterPro)
Tan01g0386 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 172 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0386 Tan-Chr1:3242848 Tan07g0203 Tan-Chr7:4599782 4.80E-205 dispersed
Tan01g0385 Tan-Chr1:3234724 Tan01g0386 Tan-Chr1:3242848 4.10E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g0386 K01051 - csv:101211449 934.48